WormBase Tree Display for Gene: WBGene00009007

WBGene00009007 SMap: S_parent: Sequence: F21D5
  Identity: Version: 2
    Name: CGC_name: otub-3 Person_evidence: WBPerson260
      Sequence_name: F21D5.2
      Molecular_name: F21D5.2a
        F21D5.2a.1
        CE03245
        F21D5.2b
        CE46110
        F21D5.2c
        CE46051
        F21D5.2b.1
        F21D5.2c.1
      Other_name: CELE_F21D5.2 Accession_evidence: NDB BX284604
      Public_name: otub-3
    DB_info: Database: AceView gene 4J493
        WormQTL gene WBGene00009007
        WormFlux gene WBGene00009007
        NDB locus_tag CELE_F21D5.2
        Panther gene CAEEL|WormBase=WBGene00009007|UniProtKB=F5GU86
          family PTHR12419
        NCBI gene 177679
        RefSeq protein NM_001268391.3
            NM_001268389.4
            NM_001268390.4
        TREEFAM TREEFAM_ID TF315010
        TrEMBL UniProtAcc F5GU87
            F5GU86
            Q19681
        UniProt_GCRP UniProtAcc F5GU86
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:49 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 28 Sep 2012 14:29:00 WBPerson2970 Name_change: CGC_name: otub-3
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: otub
    Allele (38)
    Strain: WBStrain00002486
    RNASeq_FPKM (74)
    GO_annotation: 00008659
      00008660
    Contained_in_operon: CEOP4300
    Ortholog (38)
    Paralog: WBGene00001110 Caenorhabditis elegans From_analysis: Panther
      WBGene00001112 Caenorhabditis elegans From_analysis: Panther
      WBGene00015249 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable cysteine-type deubiquitinase activity. Is an ortholog of human OTUD6A (OTU deubiquitinase 6A) and OTUD6B (OTU deubiquitinase 6B). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F21D5.2a
      F21D5.2b
      F21D5.2c
    Corresponding_transcript: F21D5.2a.1
      F21D5.2b.1
      F21D5.2c.1
    Other_sequence: CJC01761_1
      CBC05986_1
      CJC05911_1
    Associated_feature: WBsf034300
      WBsf660434
      WBsf660435
  Experimental_info: RNAi_result: WBRNAi00008039 Inferred_automatically: RNAi_primary
      WBRNAi00045191 Inferred_automatically: RNAi_primary
      WBRNAi00094700 Inferred_automatically: RNAi_primary
      WBRNAi00013670 Inferred_automatically: RNAi_primary
      WBRNAi00031216 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr5815
      Expr1022243
      Expr1033922
      Expr1149131
      Expr2014667
      Expr2032900
    Drives_construct: WBCnstr00003076
      WBCnstr00032530
    Construct_product: WBCnstr00032530
    Microarray_results (25)
    Expression_cluster (143)
    SAGE_tag: SAGE:cttactcgcttggagaa Strand: Sense
        Unambiguously_mapped
      SAGE:atttttgaga Strand: Sense
        Unambiguously_mapped
      SAGE:tgatcttctgcgagcat Strand: Antisense
      SAGE:gaacacgcct Strand: Antisense
      SAGE:tgatcttctg Strand: Antisense
      SAGE:cttactcgct Strand: Sense
        Unambiguously_mapped
      SAGE:gaacacgccttcaactc Strand: Antisense
      SAGE:tcgaaggaag Strand: Antisense
      SAGE:tcgaaggaagacaactc Strand: Antisense
      SAGE:gaaatttcca Strand: Antisense
    Interaction (139)
  Map_info: Map: IV Position: 3.95756
    Positive: Positive_clone: F21D5 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
    WBPaper00061750
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene