WormBase Tree Display for Gene: WBGene00008974
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WBGene00008974 | SMap | S_parent | Sequence | F20D1 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | tbc-1 | Person_evidence | WBPerson293 | |||||
Sequence_name | F20D1.2 | ||||||||
Molecular_name | F20D1.2 | ||||||||
F20D1.2.1 | |||||||||
CE31485 | |||||||||
Other_name | CELE_F20D1.2 | Accession_evidence | NDB | BX284606 | |||||
Public_name | tbc-1 | ||||||||
DB_info | Database (11) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:49 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 04 Jun 2008 14:26:35 | WBPerson2970 | Name_change | CGC_name | tbc-1 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | tbc | ||||||||
Allele (64) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00086049 | ||||||||
00086050 | |||||||||
00086051 | |||||||||
00086052 | |||||||||
00086053 | |||||||||
00086054 | |||||||||
00086055 | |||||||||
00116774 | |||||||||
Ortholog (36) | |||||||||
Structured_description | Automated_description | Predicted to be involved in retrograde transport, endosome to Golgi and vesicle tethering to Golgi. Predicted to be located in trans-Golgi network. Expressed in anterior gonad arm. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia type 11. Is an ortholog of human TBC1D23 (TBC1 domain family member 23). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Disease_info | Potential_model | DOID:0112324 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:25622) | ||||
Molecular_info | Corresponding_CDS | F20D1.2 | |||||||
Corresponding_CDS_history | F20D1.2:wp83 | ||||||||
Corresponding_transcript | F20D1.2.1 | ||||||||
Other_sequence | CRC10320_1 | ||||||||
Oden_isotig23850 | |||||||||
Tcir_isotig23278 | |||||||||
Hbac_isotig02427 | |||||||||
Tcol_isotig23979 | |||||||||
Tcol_isotig11491 | |||||||||
CR08312 | |||||||||
FK808815.1 | |||||||||
Associated_feature | WBsf648780 | ||||||||
WBsf663612 | |||||||||
WBsf663613 | |||||||||
WBsf236741 | |||||||||
Experimental_info | RNAi_result | WBRNAi00045094 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00013611 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00061624 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00031166 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00075824 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr13125 | ||||||||
Expr1029058 | |||||||||
Expr1033906 | |||||||||
Expr1149044 | |||||||||
Expr2017329 | |||||||||
Expr2035465 | |||||||||
Drives_construct | WBCnstr00032554 | ||||||||
Construct_product | WBCnstr00032554 | ||||||||
Microarray_results (20) | |||||||||
Expression_cluster (113) | |||||||||
Interaction | WBInteraction000239118 | ||||||||
WBProcess | WBbiopr:00000001 | ||||||||
WBbiopr:00000008 | |||||||||
WBbiopr:00000039 | |||||||||
Map_info | Map | X | Position | 21.6132 | Error | 0.002023 | |||
Positive | Positive_clone | F20D1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00031865 | ||||||||
WBPaper00038491 | |||||||||
WBPaper00055090 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |