WormBase Tree Display for Gene: WBGene00008586
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| WBGene00008586 | SMap | S_parent | Sequence | F08G12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | snrp-40.1 | Person_evidence | WBPerson713 | |||||
| Sequence_name | F08G12.2 | ||||||||
| Molecular_name | F08G12.2 | ||||||||
| F08G12.2.1 | |||||||||
| CE18578 | |||||||||
| Other_name | CELE_F08G12.2 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | snrp-40.1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:49 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 05 Apr 2017 11:17:23 | WBPerson2970 | Name_change | CGC_name | snrp-40.1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | snrp | ||||||||
| Allele (24) | |||||||||
| Strain | WBStrain00003190 | ||||||||
| WBStrain00033231 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00063953 | ||||||||
| Ortholog (31) | |||||||||
| Paralog | WBGene00015974 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00003047 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00004314 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00006474 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00010572 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00013862 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00019237 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to be part of catalytic step 2 spliceosome. Is an ortholog of human SNRNP40 (small nuclear ribonucleoprotein U5 subunit 40). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F08G12.2 | |||||||
| Corresponding_transcript | F08G12.2.1 | ||||||||
| Other_sequence (61) | |||||||||
| Associated_feature | WBsf654404 | ||||||||
| WBsf1006967 | |||||||||
| WBsf1023851 | |||||||||
| WBsf237953 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00080147 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00044037 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00030659 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00080063 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00001363 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram217 | ||||||||
| Expr1027649 | |||||||||
| Expr1033743 | |||||||||
| Expr1148004 | |||||||||
| Expr2015974 | |||||||||
| Expr2034209 | |||||||||
| Drives_construct | WBCnstr00003665 | ||||||||
| WBCnstr00032853 | |||||||||
| Construct_product | WBCnstr00032853 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (145) | |||||||||
| Interaction (147) | |||||||||
| Map_info | Map | X | Position | 2.87214 | |||||
| Positive | Positive_clone | F08G12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00040135 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
