WormBase Tree Display for Gene: WBGene00008301
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WBGene00008301 | SMap | S_parent | Sequence | C54D10 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 4 | |||||||
Name | CGC_name | pals-39 | Person_evidence | WBPerson260 | |||||
Sequence_name | C54D10.7 | ||||||||
Molecular_name | C54D10.7 | ||||||||
WP:CE43116 | |||||||||
CE43116 | |||||||||
C54D10.7.1 | |||||||||
Other_name | CELE_C54D10.7 | Accession_evidence | NDB | BX284605 | |||||
dct-3 | Paper_evidence | WBPaper00031095 | |||||||
Person_evidence | WBPerson1157 | ||||||||
Public_name | pals-39 | ||||||||
DB_info | Database | AceView | gene | 5M916 | |||||
WormQTL | gene | WBGene00008301 | |||||||
WormFlux | gene | WBGene00008301 | |||||||
NDB | locus_tag | CELE_C54D10.7 | |||||||
NCBI | gene | 183784 | |||||||
RefSeq | mRNA | NM_001269488.1 | |||||||
protein | NP_001256417.1 | ||||||||
NM_001269488.3 | |||||||||
TREEFAM | TREEFAM_ID | TF322379 | |||||||
UniProt | UniProtAcc | B6EU64 | |||||||
TrEMBL | UniProtAcc | B6EU64 | |||||||
UniProt_GCRP | UniProtAcc | B6EU64 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:49 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
2 | 08 Nov 2007 16:33:50 | WBPerson2970 | Name_change | CGC_name | dct-3 | ||||
3 | 25 Sep 2008 13:41:44 | WBPerson4025 | Event | Split_into | WBGene00138721 | ||||
4 | 26 Oct 2016 09:42:35 | WBPerson2970 | Name_change | CGC_name | pals-39 | ||||
Other_name | dct-3 | ||||||||
Split_into | WBGene00138721 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | pals | ||||||||
Allele (106) | |||||||||
RNASeq_FPKM (74) | |||||||||
Contained_in_operon | CEOP5557 | ||||||||
CEOP550 | |||||||||
Ortholog (27) | |||||||||
Paralog | WBGene00012091 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00013294 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Inparanoid_8 | |||||||||
WBGene00138721 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
WBGene00044787 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
Structured_description | Automated_description | Enriched in DA neuron; VA neuron; dopaminergic neurons; and intestine based on tiling array studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray and RNA-seq studies. Is affected by sixteen chemicals including Tunicamycin; D-glucose; and stavudine based on microarray and RNA-seq studies. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C54D10.7 | |||||||
Corresponding_CDS_history | C54D10.7a:wp195 | ||||||||
C54D10.7b:wp195 | |||||||||
Corresponding_transcript | C54D10.7.1 | ||||||||
Experimental_info | RNAi_result | WBRNAi00070092 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00012385 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1019237 | ||||||||
Expr1147112 | |||||||||
Expr2014710 | |||||||||
Expr2032945 | |||||||||
Drives_construct | WBCnstr00033071 | ||||||||
Construct_product | WBCnstr00033071 | ||||||||
Microarray_results | SMD_C54D10.7 | ||||||||
GPL14144_C54D10.7_1044-1103_0.956_1_A | |||||||||
GPL19516_CGZ0010507 | |||||||||
GPL21109_C54D10.7 | |||||||||
Expression_cluster (281) | |||||||||
Interaction (72) | |||||||||
Map_info | Map | V | Position | 4.23276 | Error | 0.008673 | |||
Positive | Positive_clone | C54D10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00031095 | ||||||||
WBPaper00061319 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |