WormBase Tree Display for Gene: WBGene00008296
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| WBGene00008296 | SMap | S_parent | Sequence | C54D10 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | cdr-2 | Paper_evidence | WBPaper00024695 | |||||
| Sequence_name | C54D10.1 | ||||||||
| Molecular_name | C54D10.1 | ||||||||
| C54D10.1.1 | |||||||||
| CE05497 | |||||||||
| Other_name | CELE_C54D10.1 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | cdr-2 | ||||||||
| DB_info | Database | AceView | gene | 5M894 | |||||
| WormQTL | gene | WBGene00008296 | |||||||
| WormFlux | gene | WBGene00008296 | |||||||
| NDB | locus_tag | CELE_C54D10.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00008296|UniProtKB=G5ECX9 | |||||||
| family | PTHR12289 | ||||||||
| NCBI | gene | 183779 | |||||||
| RefSeq | protein | NM_073713.5 | |||||||
| TREEFAM | TREEFAM_ID | TF314915 | |||||||
| TrEMBL | UniProtAcc | G5ECX9 | |||||||
| UniProt_GCRP | UniProtAcc | G5ECX9 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:48 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 23 Mar 2005 15:05:15 | WBPerson2970 | Name_change | CGC_name | cdr-2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cdr | ||||||||
| Allele (37) | |||||||||
| Strain | WBStrain00032317 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00012743 | ||||||||
| 00012744 | |||||||||
| 00012745 | |||||||||
| 00012746 | |||||||||
| 00012747 | |||||||||
| Ortholog (52) | |||||||||
| Paralog (12) | |||||||||
| Structured_description | Concise_description | cdr-2 encodes a predicted transmembrane protein that is a member of the CDR (cadmium responsive) family of proteins; cdr-2 expression is increased upon exposure to cadmium ions, and loss of cdr-2 activity results in increased sensitivity to cadmium. | Paper_evidence | WBPaper00024695 | |||||
| WBPaper00039992 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 15 Apr 2014 00:00:00 | ||||||||
| Automated_description | Involved in regulation of protein deneddylation and stress response to cadmium ion. Predicted to be located in cytoplasm. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C54D10.1 | |||||||
| Corresponding_transcript | C54D10.1.1 | ||||||||
| Other_sequence (17) | |||||||||
| Associated_feature | WBsf653219 | ||||||||
| WBsf982015 | |||||||||
| WBsf234677 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00012379 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00043133 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr5584 | ||||||||
| Expr1010950 | |||||||||
| Expr1147102 | |||||||||
| Expr2009822 | |||||||||
| Expr2028063 | |||||||||
| Drives_construct | WBCnstr00003913 | ||||||||
| WBCnstr00033076 | |||||||||
| Construct_product | WBCnstr00033076 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (333) | |||||||||
| Interaction (11) | |||||||||
| Map_info | Map | V | Position | 4.17004 | Error | 0.006923 | |||
| Positive | Positive_clone | C54D10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00024695 | ||||||||
| WBPaper00026592 | |||||||||
| WBPaper00033469 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00044578 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00058665 | |||||||||
| WBPaper00064370 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
