WormBase Tree Display for Gene: WBGene00008170
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| WBGene00008170 | SMap | S_parent | Sequence | C48B4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | C48B4.7 | |||||||
| Molecular_name | C48B4.7 | ||||||||
| C48B4.7.1 | |||||||||
| CE00483 | |||||||||
| Other_name | CELE_C48B4.7 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | C48B4.7 | ||||||||
| DB_info | Database | AceView | gene | 3K648 | |||||
| WormQTL | gene | WBGene00008170 | |||||||
| WormFlux | gene | WBGene00008170 | |||||||
| NDB | locus_tag | CELE_C48B4.7 | |||||||
| NCBI | gene | 176350 | |||||||
| RefSeq | protein | NM_001392178.1 | |||||||
| SwissProt | UniProtAcc | P34361 | |||||||
| TREEFAM | TREEFAM_ID | TF322867 | |||||||
| UniProt_GCRP | UniProtAcc | P34361 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:48 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (15) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Contained_in_operon | CEOP3600 | ||||||||
| Ortholog | WBGene00139994 | Caenorhabditis brenneri | From_analysis | TreeFam | |||||
| WBGene00031533 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||||
| OMA | |||||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00055070 | Caenorhabditis remanei | From_analysis | OMA | ||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00191388 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | ||||||
| WormBase-Compara | |||||||||
| CSP26.g13079 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||||
| Cni-C48B4.7 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
| Csp5_scaffold_00327.g9465 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
| FL83_07382 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||||
| chrIII_pilon.g8649 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Paralog | WBGene00008169 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| WBGene00008172 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00008173 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Structured_description | Automated_description | Enriched in AFD; DVC; germ line; germline precursor cell; and head mesodermal cell based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray and RNA-seq studies. Is affected by nine chemicals including rotenone; manganese chloride; and Zidovudine based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Family of unknown function (DUF5373) and Protein of unknown function DUF5373. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C48B4.7 | |||||||
| Corresponding_transcript | C48B4.7.1 | ||||||||
| Associated_feature | WBsf976290 | ||||||||
| WBsf227315 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00012096 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00006754 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00029935 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00042717 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00062168 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00103218 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1020103 | ||||||||
| Expr1033550 | |||||||||
| Expr1146708 | |||||||||
| Expr2001735 | |||||||||
| Expr2019963 | |||||||||
| Drives_construct | WBCnstr00033183 | ||||||||
| Construct_product | WBCnstr00033183 | ||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (142) | |||||||||
| Interaction | WBInteraction000112122 | ||||||||
| WBInteraction000381064 | |||||||||
| WBInteraction000381327 | |||||||||
| WBInteraction000436072 | |||||||||
| Map_info | Positive | Positive_clone | C48B4 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | III | 0.606138 | |||||||
| Method | Gene |
