WormBase Tree Display for Gene: WBGene00008050
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| WBGene00008050 | SMap | S_parent | Sequence | C41C4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | chst-1 | Person_evidence | WBPerson34346 | |||||
| Sequence_name | C41C4.1 | ||||||||
| Molecular_name | C41C4.1 | ||||||||
| C41C4.1.1 | |||||||||
| CE01516 | |||||||||
| Other_name | CELE_C41C4.1 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | chst-1 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:48 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 28 Sep 2016 15:57:39 | WBPerson2970 | Name_change | CGC_name | chst-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | chst | ||||||||
| Allele (17) | |||||||||
| Strain | WBStrain00031526 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (17) | |||||||||
| Ortholog (24) | |||||||||
| Paralog (27) | |||||||||
| Structured_description | Concise_description | chst-1 encodes for a chondroitin sulfate (CS) 4-O-sulfotransferase in C. elegans and shows similarity to human CS 4-O-sulfotransferases; loss of chst-1 leads to lack of sulfation at the C4-position of galactosamine in CS and reduced survival rates of the worms upon exposure to sodium hypochlorite. | Paper_evidence | WBPaper00050159 | |||||
| WBPaper00050258 | |||||||||
| Person_evidence | WBPerson26314 | ||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 18 Oct 2016 00:00:00 | ||||||||
| Automated_description | Enables chondroitin 4-sulfotransferase activity. Involved in chondroitin sulfate biosynthetic process and positive regulation of response to oxidative stress. Predicted to be located in Golgi membrane. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C41C4.1 | |||||||
| Corresponding_transcript | C41C4.1.1 | ||||||||
| Associated_feature | WBsf988652 | ||||||||
| WBsf223442 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00042274 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00011829 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1018823 | ||||||||
| Expr1146264 | |||||||||
| Expr2010001 | |||||||||
| Expr2028242 | |||||||||
| Drives_construct | WBCnstr00033276 | ||||||||
| Construct_product | WBCnstr00033276 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (78) | |||||||||
| Interaction | WBInteraction000230799 | ||||||||
| WBInteraction000239545 | |||||||||
| WBInteraction000518630 | |||||||||
| Map_info | Map | II | Position | 0.675987 | |||||
| Positive | Positive_clone | C41C4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00035539 | ||||||||
| WBPaper00050159 | |||||||||
| WBPaper00050258 | |||||||||
| WBPaper00065080 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
