WormBase Tree Display for Gene: WBGene00008028
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WBGene00008028 | SMap | S_parent | Sequence | C39E9 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | scl-6 | Person_evidence | WBPerson261 | |||
Sequence_name | C39E9.4 | ||||||
Molecular_name | C39E9.4 | ||||||
C39E9.4.1 | |||||||
CE05387 | |||||||
Other_name | CELE_C39E9.4 | Accession_evidence | NDB | BX284604 | |||
Public_name | scl-6 | ||||||
DB_info | Database | AceView | gene | 4N833 | |||
WormQTL | gene | WBGene00008028 | |||||
WormFlux | gene | WBGene00008028 | |||||
NDB | locus_tag | CELE_C39E9.4 | |||||
Panther | gene | CAEEL|WormBase=WBGene00008028|UniProtKB=Q18538 | |||||
family | PTHR10334 | ||||||
NCBI | gene | 183343 | |||||
RefSeq | protein | NM_070107.2 | |||||
TREEFAM | TREEFAM_ID | TF352352 | |||||
TrEMBL | UniProtAcc | Q18538 | |||||
UniProt_GCRP | UniProtAcc | Q18538 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | scl | ||||||
Allele (27) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00061604 | ||||||
Ortholog (58) | |||||||
Paralog (32) | |||||||
Structured_description | Concise_description | scl-6 encodes a predicted extracellular protein that is a member of the C. elegans family of SCP/TAPS domain-containing proteins. | Curator_confirmed | WBPerson1843 | |||
Date_last_updated | 26 Mar 2008 00:00:00 | ||||||
Automated_description | Predicted to be located in extracellular space. Is an ortholog of human PI15 (peptidase inhibitor 15). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | C39E9.4 | |||||
Corresponding_transcript | C39E9.4.1 | ||||||
Other_sequence | CSC00663_1 | ||||||
FD516516.1 | |||||||
Associated_feature | WBsf646508 | ||||||
WBsf229376 | |||||||
WBsf229377 | |||||||
Experimental_info | RNAi_result | WBRNAi00011789 | Inferred_automatically | RNAi_primary | |||
WBRNAi00042222 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00029690 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1012914 | ||||||
Expr1146213 | |||||||
Expr2015641 | |||||||
Expr2033875 | |||||||
Drives_construct | WBCnstr00033295 | ||||||
WBCnstr00042226 | |||||||
Construct_product | WBCnstr00033295 | ||||||
WBCnstr00042226 | |||||||
Microarray_results (17) | |||||||
Expression_cluster (170) | |||||||
Interaction | WBInteraction000031657 | ||||||
WBInteraction000123095 | |||||||
WBInteraction000123096 | |||||||
WBInteraction000186491 | |||||||
WBInteraction000308966 | |||||||
WBInteraction000308967 | |||||||
WBInteraction000335203 | |||||||
WBInteraction000401158 | |||||||
WBInteraction000405451 | |||||||
Map_info | Map | IV | Position | 7.75383 | Error | 0.009868 | |
Positive | Positive_clone | C39E9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00033099 | ||||||
WBPaper00038491 | |||||||
WBPaper00055090 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |