WormBase Tree Display for Gene: WBGene00007971
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| WBGene00007971 | SMap | S_parent | Sequence | C36B1 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | rpb-3 | Person_evidence | WBPerson1787 | |||||
| Sequence_name | C36B1.3 | ||||||||
| Molecular_name | C36B1.3 | ||||||||
| C36B1.3.1 | |||||||||
| CE39091 | |||||||||
| Other_name | CELE_C36B1.3 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | rpb-3 | ||||||||
| DB_info | Database | AceView | gene | 1J307 | |||||
| WormQTL | gene | WBGene00007971 | |||||||
| WormFlux | gene | WBGene00007971 | |||||||
| NDB | locus_tag | CELE_C36B1.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00007971|UniProtKB=Q93338 | |||||||
| family | PTHR11800 | ||||||||
| NCBI | gene | 172680 | |||||||
| RefSeq | protein | NM_059960.8 | |||||||
| TREEFAM | TREEFAM_ID | TF103038 | |||||||
| TrEMBL | UniProtAcc | Q93338 | |||||||
| UniProt_GCRP | UniProtAcc | Q93338 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:48 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 22 Aug 2005 11:40:04 | WBPerson2970 | Event | Split_into | WBGene00044615 | ||||
| 3 | 04 Oct 2007 14:17:58 | WBPerson2970 | Name_change | CGC_name | rpb-3 | ||||
| Split_into | WBGene00044614 | ||||||||
| WBGene00044615 | |||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rpb | ||||||||
| Allele (23) | |||||||||
| Strain | WBStrain00003145 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00085710 | ||||||||
| 00085711 | |||||||||
| 00085712 | |||||||||
| 00085713 | |||||||||
| 00115957 | |||||||||
| 00115958 | |||||||||
| 00115959 | |||||||||
| Contained_in_operon | CEOP1981 | ||||||||
| Ortholog (56) | |||||||||
| Paralog | WBGene00019275 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00044614 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable DNA-directed 5'-3' RNA polymerase activity and protein dimerization activity. Predicted to contribute to RNA polymerase II activity. Predicted to be involved in transcription by RNA polymerase II. Predicted to be part of RNA polymerase II, core complex. Is an ortholog of human POLR2C (RNA polymerase II subunit C). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C36B1.3 | |||||||
| Corresponding_CDS_history | C36B1.3:wp148 | ||||||||
| Corresponding_transcript | C36B1.3.1 | ||||||||
| Other_sequence (59) | |||||||||
| Associated_feature | WBsf643547 | ||||||||
| WBsf643548 | |||||||||
| WBsf976859 | |||||||||
| WBsf218197 | |||||||||
| Experimental_info | RNAi_result (19) | ||||||||
| Expr_pattern | Chronogram1992 | ||||||||
| Expr1013228 | |||||||||
| Expr1033460 | |||||||||
| Expr1146035 | |||||||||
| Expr2015423 | |||||||||
| Expr2033658 | |||||||||
| Drives_construct | WBCnstr00003623 | ||||||||
| WBCnstr00033340 | |||||||||
| Construct_product | WBCnstr00033340 | ||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (118) | |||||||||
| Interaction (215) | |||||||||
| Map_info | Map | I | Position | 3.03833 | Error | 0.000568 | |||
| Positive | Positive_clone | C36B1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00029038 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00040135 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
