WormBase Tree Display for Gene: WBGene00007687
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WBGene00007687 | SMap | S_parent | Sequence | C18E9 | ||
---|---|---|---|---|---|---|
Identity (6) | ||||||
Gene_info | Biotype | SO:0001217 | ||||
Allele (46) | ||||||
RNASeq_FPKM (74) | ||||||
Ortholog (30) | ||||||
Paralog | WBGene00002915 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||
WBGene00011326 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||
WBGene00017013 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||
WBGene00020516 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||
Structured_description | Automated_description | Enriched in arcade cell; excretory gland cell; pharyngeal muscle cell; and sensory neurons based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; tiling array; and RNA-seq studies. Is affected by sixteen chemicals including 1-methylnicotinamide; D-glucose; and stavudine based on RNA-seq and microarray studies. Human ortholog(s) of this gene implicated in Ehlers-Danlos syndrome and vesicoureteral reflux. Human TNXB enables collagen fibril binding activity. Is predicted to encode a protein with the following domains: Fibronectin type III superfamily; TM proximal of protein tyrosine phosphatase, receptor type J; PTPRJ, transmembrane domain; Fibronectin type III; Immunoglobulin-like fold; and Fibronectin type III domain. Is an ortholog of human TNXA (tenascin XA (pseudogene)) and TNXB (tenascin XB). | Paper_evidence | WBPaper00065943 | ||
Curator_confirmed (2) | ||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||
Disease_info | Potential_model | DOID:9620 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11976) | |
DOID:13359 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11976) | |||
Molecular_info | Corresponding_CDS | C18E9.7 | ||||
Corresponding_CDS_history | C18E9.7:wp263 | |||||
Corresponding_transcript | C18E9.7.1 | |||||
Other_sequence | AS08763 | |||||
ACC05160_1 | ||||||
MHC09111_1 | ||||||
ACC34413_1 | ||||||
MH10960 | ||||||
ASC04679_1 | ||||||
FC551183.1 | ||||||
FC551769.1 | ||||||
JI212309.1 | ||||||
Acan_isotig14345 | ||||||
Associated_feature | WBsf665870 | |||||
WBsf665871 | ||||||
WBsf717750 | ||||||
WBsf988890 | ||||||
WBsf988891 | ||||||
WBsf1012779 | ||||||
WBsf1012780 | ||||||
WBsf223579 | ||||||
Experimental_info | RNAi_result | WBRNAi00011009 | Inferred_automatically | RNAi_primary | ||
WBRNAi00081689 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00040956 | Inferred_automatically | RNAi_primary | ||||
Expr_pattern | Expr1016580 | |||||
Expr1033322 | ||||||
Expr1144999 | ||||||
Expr2000984 | ||||||
Expr2019203 | ||||||
Drives_construct | WBCnstr00033554 | |||||
Construct_product | WBCnstr00033554 | |||||
Microarray_results (19) | ||||||
Expression_cluster (184) | ||||||
Interaction (56) | ||||||
Map_info | Positive | Positive_clone | C18E9 | Inferred_automatically | From sequence, transcript, pseudogene data | |
Interpolated_map_position | II | 0.946824 | ||||
Reference | WBPaper00053423 | |||||
Method | Gene |