WormBase Tree Display for Gene: WBGene00007662
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WBGene00007662 | SMap | S_parent | Sequence | C17H1 | ||
---|---|---|---|---|---|---|
Identity | Version | 2 | ||||
Name (5) | ||||||
DB_info | Database | AceView | gene | 1N711 | ||
WormQTL | gene | WBGene00007662 | ||||
WormFlux | gene | WBGene00007662 | ||||
NDB | locus_tag | CELE_C17H1.9 | ||||
NCBI | gene | 3565285 | ||||
RefSeq | mRNA | NM_001025832.3 | ||||
protein | NP_001021003.1 | |||||
NM_001025832.4 | ||||||
TREEFAM | TREEFAM_ID | TF322878 | ||||
UniProt | UniProtAcc | Q7YX94 | ||||
TrEMBL | UniProtAcc | Q7YX94 | ||||
UniProt_GCRP | UniProtAcc | Q7YX94 | ||||
Species | Caenorhabditis elegans | |||||
History | Version_change (2) | |||||
Status | Live | |||||
Gene_info | Biotype | SO:0001217 | ||||
Gene_class | pals | |||||
Allele (47) | ||||||
RNASeq_FPKM (74) | ||||||
Ortholog | Sp34_50055100 | Caenorhabditis inopinata | From_analysis | WormBase-Compara | ||
chrI_pilon.g2654 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||
Paralog | WBGene00007656 | Caenorhabditis elegans | From_analysis | TreeFam | ||
WormBase-Compara | ||||||
WBGene00007658 | Caenorhabditis elegans | From_analysis | TreeFam | |||
WormBase-Compara | ||||||
WBGene00044711 | Caenorhabditis elegans | From_analysis | modENCODE_Pseudogenes | |||
WormBase-Compara | ||||||
WBGene00009061 | Caenorhabditis elegans | From_analysis | TreeFam | |||
WormBase-Compara | ||||||
WBGene00044722 | Caenorhabditis elegans | From_analysis | modENCODE_Pseudogenes | |||
WBGene00013294 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||
WBGene00016281 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||
WBGene00044237 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||
Structured_description | Automated_description | Enriched in AIZ; AVG; dopaminergic neurons; and mechanosensory neurons based on tiling array and single-cell RNA-seq studies. Is affected by several genes including skn-1; eat-2; and elt-2 based on tiling array; microarray; and RNA-seq studies. Is affected by eleven chemicals including Mercuric Chloride; Zidovudine; and allantoin based on microarray and RNA-seq studies. | Paper_evidence | WBPaper00065943 | ||
Curator_confirmed | WBPerson324 | |||||
WBPerson37462 | ||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||
Molecular_info | Corresponding_CDS | C17H1.9 | ||||
Corresponding_transcript | C17H1.9.1 | |||||
Associated_feature | WBsf985776 | |||||
WBsf985777 | ||||||
WBsf985778 | ||||||
WBsf985779 | ||||||
WBsf1011014 | ||||||
WBsf1011015 | ||||||
WBsf218680 | ||||||
Experimental_info | Expr_pattern | Expr1144899 | ||||
Expr2014714 | ||||||
Expr2032949 | ||||||
Drives_construct | WBCnstr00033570 | |||||
Construct_product | WBCnstr00033570 | |||||
Microarray_results | A_12_P112086 | |||||
GPL19516_CGZ0005181 | ||||||
GPL21109_C17H1.28 | ||||||
GPL21109_C17H1.9 | ||||||
GPL8304_CE_WBGene00007662_A | ||||||
GPL8304_CE_WBGene00007662_B | ||||||
GPL8673_C17H1_9P00761 | ||||||
GPL8673_C17H1_9P00843 | ||||||
GPL8673_C17H1_9P01003 | ||||||
Expression_cluster (92) | ||||||
Map_info | Map | I | Position | 17.2211 | ||
Positive | Positive_clone | C17H1 | Inferred_automatically | From sequence, transcript, pseudogene data | ||
Pseudo_map_position | ||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||
Method | Gene |