WormBase Tree Display for Gene: WBGene00007577
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WBGene00007577 | SMap | S_parent | Sequence | C14B1 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | nrde-1 | Person_evidence | WBPerson5515 | |||
WBPerson315 | |||||||
Sequence_name | C14B1.6 | ||||||
Molecular_name | C14B1.6a | ||||||
C14B1.6a.1 | |||||||
CE31415 | |||||||
C14B1.6b | |||||||
CE52454 | |||||||
C14B1.6b.1 | |||||||
Other_name | CELE_C14B1.6 | Accession_evidence | NDB | BX284603 | |||
Public_name | nrde-1 | ||||||
DB_info | Database | AceView | gene | 3E807 | |||
WormQTL | gene | WBGene00007577 | |||||
WormFlux | gene | WBGene00007577 | |||||
NDB | locus_tag | CELE_C14B1.6 | |||||
NCBI | gene | 175477 | |||||
RefSeq | protein | NM_001361894.4 | |||||
NM_065351.8 | |||||||
TrEMBL | UniProtAcc | Q17968 | |||||
A0A2K5ATT7 | |||||||
UniProt_GCRP | UniProtAcc | Q17968 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | nrde | ||||||
Allele (119) | |||||||
Strain | WBStrain00040757 | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00059813 | ||||||
00059814 | |||||||
Contained_in_operon | CEOP3136 | ||||||
Ortholog (24) | |||||||
Structured_description | Concise_description | nrde-1 encodes a novel protein conserved amongst nematodes; NRDE-1 activity is required, along with that of NRDE-2, NRDE-3, and NRDE-4, for regulation of gene expression via a nuclear RNAi pathway that inhibits RNA polymerase II elongation and deposits histone H3K9 methylation on genomic regions targeted by RNAi; an NRDE-1:GFP fusion protein localizes to the nucleus. | Paper_evidence | WBPaper00040168 | |||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 09 Sep 2011 00:00:00 | ||||||
Automated_description | Involved in regulatory ncRNA-mediated post-transcriptional gene silencing. Located in nucleus. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | C14B1.6a | |||||
C14B1.6b | |||||||
Corresponding_CDS_history | C14B1.6:wp82 | ||||||
Corresponding_transcript (2) | |||||||
Other_sequence | CRC07998_1 | ||||||
CR04204 | |||||||
Associated_feature | WBsf658767 | ||||||
WBsf658768 | |||||||
WBsf991880 | |||||||
WBsf991881 | |||||||
WBsf224647 | |||||||
Experimental_info | RNAi_result | WBRNAi00010727 | Inferred_automatically | RNAi_primary | |||
WBRNAi00067969 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00067214 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00040497 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00040494 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00006299 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00010725 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00006346 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr9671 | ||||||
Expr1024514 | |||||||
Expr1033260 | |||||||
Expr1144562 | |||||||
Expr2014438 | |||||||
Expr2032679 | |||||||
Drives_construct | WBCnstr00033637 | ||||||
Construct_product | WBCnstr00014214 | ||||||
WBCnstr00033637 | |||||||
Microarray_results (20) | |||||||
Expression_cluster (100) | |||||||
Interaction | WBInteraction000363076 | ||||||
WBInteraction000441362 | |||||||
WBInteraction000570063 | |||||||
Map_info | Map | III | Position | -4.35611 | Error | 0.037595 | |
Positive | Positive_clone | C14B1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference (18) | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |