WormBase Tree Display for Gene: WBGene00007417
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| WBGene00007417 | SMap | S_parent | Sequence | C07E3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | ceh-58 | Person_evidence | WBPerson83 | |||||
| Sequence_name | C07E3.6 | ||||||||
| Molecular_name | C07E3.6 | ||||||||
| C07E3.6.1 | |||||||||
| CE35825 | |||||||||
| Other_name | CELE_C07E3.6 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | ceh-58 | ||||||||
| DB_info | Database | AceView | gene | 2K660 | |||||
| WormQTL | gene | WBGene00007417 | |||||||
| WormFlux | gene | WBGene00007417 | |||||||
| NDB | locus_tag | CELE_C07E3.6 | |||||||
| NCBI | gene | 182371 | |||||||
| RefSeq | protein | NM_063833.6 | |||||||
| TREEFAM | TREEFAM_ID | TF106461 | |||||||
| TrEMBL | UniProtAcc | Q17792 | |||||||
| UniProt_GCRP | UniProtAcc | Q17792 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:48 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 30 Sep 2011 16:40:16 | WBPerson2970 | Name_change | CGC_name | ceh-58 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ceh | ||||||||
| Allele (35) | |||||||||
| Strain | WBStrain00048962 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00059222 | ||||||||
| 00059223 | |||||||||
| 00059224 | |||||||||
| 00059225 | |||||||||
| 00059226 | |||||||||
| 00059227 | |||||||||
| 00059228 | |||||||||
| 00059229 | |||||||||
| 00059230 | |||||||||
| 00115545 | |||||||||
| Ortholog (28) | |||||||||
| Paralog | WBGene00000439 | ||||||||
| WBGene00000462 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Structured_description | Concise_description | ceh-58 is a divergent homeobox gene encoding one homeodomain; most homeodomain proteins bind DNA and function as transcription factors; ceh-58 is expressed in the ventral nerve cord, nerve ring, dorsal nerve cord, head neurons, and the tail neurons. | Paper_evidence | WBPaper00046864 | |||||
| WBPaper00029055 | |||||||||
| WBPaper00030839 | |||||||||
| WBPaper00036375 | |||||||||
| WBPaper00037950 | |||||||||
| WBPaper00045521 | |||||||||
| WBPaper00045974 | |||||||||
| Person_evidence | WBPerson83 | ||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 20 Apr 2017 00:00:00 | ||||||||
| Automated_description | Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed in neurons and somatic nervous system. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C07E3.6 | |||||||
| Corresponding_CDS_history | C07E3.6:wp90 | ||||||||
| C07E3.6:wp111 | |||||||||
| Corresponding_transcript | C07E3.6.1 | ||||||||
| Other_sequence | CBC16745_1 | ||||||||
| CJC14745_1 | |||||||||
| CJC04177_1 | |||||||||
| Associated_feature (11) | |||||||||
| Transcription_factor | WBTranscriptionFactor000688 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00010392 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00115779 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00010393 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00028634 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00040005 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00040004 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr7420 | ||||||||
| Expr15598 | |||||||||
| Expr1023786 | |||||||||
| Expr1033194 | |||||||||
| Expr1144082 | |||||||||
| Expr2009895 | |||||||||
| Expr2028135 | |||||||||
| Drives_construct | WBCnstr00012563 | ||||||||
| WBCnstr00033753 | |||||||||
| Construct_product | WBCnstr00033753 | ||||||||
| Microarray_results (25) | |||||||||
| Expression_cluster (112) | |||||||||
| Interaction (96) | |||||||||
| Map_info | Map | II | Position | 2.5206 | Error | 0.009883 | |||
| Positive | Positive_clone | C07E3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027309 | ||||||||
| WBPaper00060123 | |||||||||
| WBPaper00065013 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
