WormBase Tree Display for Gene: WBGene00007262
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WBGene00007262 | SMap | S_parent | Sequence | C02D4 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 3 | |||||
Name | CGC_name | jud-4 | Paper_evidence | WBPaper00031371 | |||
Person_evidence | WBPerson360 | ||||||
Sequence_name | C02D4.1 | ||||||
Molecular_name | C02D4.1 | ||||||
C02D4.1.1 | |||||||
CE44488 | |||||||
Other_name | CELE_C02D4.1 | Accession_evidence | NDB | BX284606 | |||
Public_name | jud-4 | ||||||
DB_info | Database | AceView | gene | XP903 | |||
WormQTL | gene | WBGene00007262 | |||||
WormFlux | gene | WBGene00007262 | |||||
NDB | locus_tag | CELE_C02D4.1 | |||||
Panther | gene | CAEEL|WormBase=WBGene00007262|UniProtKB=Q6LA91 | |||||
family | PTHR21593 | ||||||
NCBI | gene | 182109 | |||||
RefSeq | protein | NM_078133.6 | |||||
TREEFAM | TREEFAM_ID | TF316270 | |||||
TrEMBL | UniProtAcc | Q6LA91 | |||||
UniProt_GCRP | UniProtAcc | Q6LA91 | |||||
Species | Caenorhabditis elegans | ||||||
History (2) | |||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | jud | ||||||
Allele (43) | |||||||
RNASeq_FPKM (74) | |||||||
Ortholog (25) | |||||||
Paralog (38) | |||||||
Structured_description | Concise_description | jud-4 encodes an unfamiliar protein, putatively secreted, that isrequired both for normal sensitivity to ethanol and for survival afterfreezing and thawing; JUD-4 is expressed in hypodermis and vulvalmuscles; JUD-4 is orthologous to Brugia malayi Bm1_40315, but lacksobvious orthologies to non-nematode proteins; JUD-4's C-terminal domainhas possible similarity to F40E10.5, and to proteins such as human HOMER1; jud-4(ys18) mutants show delayed sensitivity to ethanol levelsthat rapidly paralyze normal worms, but do not survive freezing andrethawing as does wild-type; JUD-4 has no obvious function in mass RNAi assays. | Paper_evidence | WBPaper00031371 | |||
Curator_confirmed | WBPerson567 | ||||||
Date_last_updated | 04 Feb 2008 00:00:00 | ||||||
Automated_description | Expressed in hypodermis and vulval muscle. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | C02D4.1 | |||||
Corresponding_CDS_history | C02D4.1:wp179 | ||||||
C02D4.1:wp211 | |||||||
Corresponding_transcript | C02D4.1.1 | ||||||
Other_sequence | CJC12505_1 | ||||||
Acan_isotig16488 | |||||||
Associated_feature | WBsf648791 | ||||||
WBsf648792 | |||||||
WBsf648793 | |||||||
WBsf663626 | |||||||
WBsf1008162 | |||||||
WBsf236757 | |||||||
Experimental_info | RNAi_result | WBRNAi00039410 | Inferred_automatically | RNAi_primary | |||
WBRNAi00009984 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr7885 | ||||||
Expr1028098 | |||||||
Expr1143526 | |||||||
Expr2012897 | |||||||
Expr2031131 | |||||||
Drives_construct | WBCnstr00012968 | ||||||
WBCnstr00033875 | |||||||
Construct_product | WBCnstr00012968 | ||||||
WBCnstr00033875 | |||||||
Microarray_results (23) | |||||||
Expression_cluster (157) | |||||||
Interaction | WBInteraction000292619 | ||||||
WBInteraction000300241 | |||||||
WBInteraction000365446 | |||||||
Map_info | Map | X | Position | 22.331 | Error | 0.007282 | |
Positive | Positive_clone | C02D4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Mapping_data | Pos_neg_data | 10902 | |||||
10903 | |||||||
10904 | |||||||
Reference (3) | |||||||
Remark | WBGene00077533 created in error and merged into this gene. | Curator_confirmed | WBPerson2970 | ||||
Method | Gene |