WormBase Tree Display for Gene: WBGene00007260
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| WBGene00007260 | SMap | S_parent | Sequence | C02C6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | olrn-1 | Person_evidence | WBPerson309 | |||||
| Sequence_name | C02C6.2 | ||||||||
| Molecular_name | C02C6.2a | ||||||||
| C02C6.2a.1 | |||||||||
| CE53375 | |||||||||
| C02C6.2b | |||||||||
| CE23514 | |||||||||
| C02C6.2b.1 | |||||||||
| Other_name | nsy-6 | Paper_evidence | WBPaper00029060 | ||||||
| CELE_C02C6.2 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | olrn-1 | ||||||||
| DB_info | Database | WormQTL | gene | WBGene00007260 | |||||
| WormFlux | gene | WBGene00007260 | |||||||
| NDB | locus_tag | CELE_C02C6.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00007260|UniProtKB=Q564X8 | |||||||
| family | PTHR36300 | ||||||||
| NCBI | gene | 181642 | |||||||
| RefSeq | protein | NM_001373597.2 | |||||||
| NM_001029163.8 | |||||||||
| TREEFAM | TREEFAM_ID | TF343081 | |||||||
| TrEMBL | UniProtAcc | Q564X8 | |||||||
| Q93174 | |||||||||
| UniProt_GCRP | UniProtAcc | Q564X8 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:47 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 25 Jul 2007 09:59:20 | WBPerson2970 | Name_change | CGC_name | olrn-1 | ||||
| Other_name | nsy-6 | ||||||||
| 3 | 02 Mar 2018 10:40:20 | WBPerson4025 | Event | Split_into | WBGene00303034 | ||||
| Split_into | WBGene00303034 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | olrn | ||||||||
| Allele (146) | |||||||||
| Strain | WBStrain00022197 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00081145 | ||||||||
| 00081146 | |||||||||
| 00081147 | |||||||||
| Ortholog (29) | |||||||||
| Structured_description | Concise_description | olrn-1 encodes, by alternative splicing, two isoforms of a transmembrane protein required for differentiation of the AWC[ON] neuron, expression of str-2 in AWC[ON], adaptation to benzaldehyde, chemotaxis to butanone, and enhancement of chemotaxis to butanone by the presence of food; OLRN-1 is orthologous to Drosophila melanogaster RAW and Schistosoma japonicum SJCHGC05616; while OLRN-1 has orthologs in nematodes, trematodes, and arthropods, its has no obvious chordate homologs; OLRN-6 is expressed in many pharyngeal neurons and some head neurons, but is required solely in the AWC[ON] neuron for butanone enhancement; OLRN-6's function in butanone enhancement is both serotonin- and dopamine-independent, and appears to also act in chemotactic enhancement of 2,3-pentanedione and isoamyl alcohol; by orthology with RAW, OLRN-6 is predicted to inhibit JNK-1 signalling, which may in turn allow the asymmetrical AWC[ON] fate to emerge. | Paper_evidence | WBPaper00029060 | |||||
| WBPaper00030852 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 25 Jul 2007 00:00:00 | ||||||||
| Automated_description | Involved in olfactory learning. Predicted to be located in plasma membrane. Expressed in head neurons; pharyngeal cell; and rectal gland cell. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C02C6.2a | |||||||
| C02C6.2b | |||||||||
| Corresponding_CDS_history | C02C6.2a:wp271 | ||||||||
| C02C6.2c:wp264 | |||||||||
| Corresponding_transcript | C02C6.2a.1 | ||||||||
| C02C6.2b.1 | |||||||||
| Other_sequence (11) | |||||||||
| Associated_feature (17) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00028339 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00009982 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00039408 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr4751 | ||||||||
| Expr8020 | |||||||||
| Expr8021 | |||||||||
| Expr1020418 | |||||||||
| Expr1033132 | |||||||||
| Expr1143524 | |||||||||
| Expr2014625 | |||||||||
| Expr2032858 | |||||||||
| Drives_construct | WBCnstr00012220 | ||||||||
| WBCnstr00013058 | |||||||||
| WBCnstr00013059 | |||||||||
| WBCnstr00033877 | |||||||||
| Construct_product | WBCnstr00033877 | ||||||||
| Regulate_expr_cluster | WBPaper00059567:olrn-1(ums9)_regulated | ||||||||
| Microarray_results (27) | |||||||||
| Expression_cluster (161) | |||||||||
| Interaction | WBInteraction000052792 | ||||||||
| WBInteraction000052793 | |||||||||
| WBInteraction000257638 | |||||||||
| WBInteraction000349311 | |||||||||
| WBInteraction000404163 | |||||||||
| WBInteraction000462654 | |||||||||
| Anatomy_function | WBbtf0534 | ||||||||
| WBbtf0535 | |||||||||
| WBbtf0536 | |||||||||
| WBbtf0537 | |||||||||
| WBbtf0538 | |||||||||
| WBbtf0539 | |||||||||
| WBbtf0540 | |||||||||
| WBbtf0541 | |||||||||
| WBbtf0542 | |||||||||
| Map_info | Map | X | Position | 22.8317 | Error | 0.008909 | |||
| Positive | Positive_clone | C02C6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00010096 | ||||||||
| WBPaper00018960 | |||||||||
| WBPaper00029060 | |||||||||
| WBPaper00031175 | |||||||||
| WBPaper00038825 | |||||||||
| WBPaper00059567 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
