WormBase Tree Display for Gene: WBGene00006708
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| WBGene00006708 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y54G2A | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | ubc-13 | Person_evidence | WBPerson89 | |||||
| Sequence_name | Y54G2A.31 | ||||||||
| Molecular_name | Y54G2A.31 | ||||||||
| Y54G2A.31.1 | |||||||||
| CE31652 | |||||||||
| Other_name | CELE_Y54G2A.31 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | ubc-13 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:41 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ubc | ||||||||
| Allele (36) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Contained_in_operon | CEOP4072 | ||||||||
| Ortholog (40) | |||||||||
| Paralog (24) | |||||||||
| Structured_description | Concise_description | ubc-13 encodes an E2 ubiquitin-conjugating enzyme; by homology, UBC-13 is predicted to function in the covalent attachment of ubiquitin molecules to protein substrates, via its association with an E3 ubiquitin-protein ligase; UBC-13 physically interacts with the UEV-1 ubiquitin-conjugating enzyme variant, and like UEV-1, ubc-13 mutations result in defects in GLR-1 glutamate receptor trafficking and hence, abnormal locomotory behavior; in large-scale RNAi screens, loss of ubc-13 activity also results in embryonic lethality and reduced brood size. | Paper_evidence | WBPaper00024497 | |||||
| WBPaper00027315 | |||||||||
| WBPaper00037956 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 07 Feb 2011 00:00:00 | ||||||||
| Automated_description | Contributes to ubiquitin-protein transferase activity. Involved in protein ubiquitination and regulation of protein localization to cell surface. Part of ubiquitin conjugating enzyme complex. Expressed in several structures, including intestinal cell. Is an ortholog of human UBE2N (ubiquitin conjugating enzyme E2 N) and UBE2NL (ubiquitin conjugating enzyme E2 N like (gene/pseudogene)). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y54G2A.31 | |||||||
| Corresponding_CDS_history | Y54G2A.31:wp82 | ||||||||
| Corresponding_transcript | Y54G2A.31.1 | ||||||||
| Other_sequence (47) | |||||||||
| Associated_feature | WBsf995816 | ||||||||
| WBsf995817 | |||||||||
| WBsf995818 | |||||||||
| WBsf1016976 | |||||||||
| WBsf1016977 | |||||||||
| WBsf1016978 | |||||||||
| WBsf229850 | |||||||||
| WBsf229851 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00082828 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00107653 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00057464 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00094718 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00107007 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00106926 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00082837 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00033563 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr14704 | ||||||||
| Expr1021723 | |||||||||
| Expr1032791 | |||||||||
| Expr1160895 | |||||||||
| Expr2017699 | |||||||||
| Expr2035837 | |||||||||
| Drives_construct | WBCnstr00041301 | ||||||||
| Construct_product | WBCnstr00041301 | ||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (101) | |||||||||
| Interaction (91) | |||||||||
| Map_info | Map | IV | Position | -6.69587 | Error | 0.007191 | |||
| Positive | Positive_clone | Y54G2A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Y94H6_148 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (16) | |||||||||
| Remark | Sequence connection from [Jones D, Crowe E, Stevens TA, Candido EPM], replaces previous (errant) sequence connection. 02/06/10 krb. | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
