WormBase Tree Display for Gene: WBGene00006702
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| WBGene00006702 | SMap | S_parent | Sequence | Y71G12B | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | ubc-3 | Person_evidence | WBPerson89 | |||||
| Sequence_name | Y71G12B.15 | ||||||||
| Molecular_name | Y71G12B.15a | ||||||||
| Y71G12B.15a.1 | |||||||||
| CE38573 | |||||||||
| Y71G12B.15b | |||||||||
| CE22885 | |||||||||
| Y71G12B.15b.1 | |||||||||
| Other_name | CELE_Y71G12B.15 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | ubc-3 | ||||||||
| DB_info | Database | AceView | gene | 1C173 | |||||
| WormQTL | gene | WBGene00006702 | |||||||
| WormFlux | gene | WBGene00006702 | |||||||
| NDB | locus_tag | CELE_Y71G12B.15 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006702|UniProtKB=Q95XN7 | |||||||
| family | PTHR24067 | ||||||||
| NCBI | gene | 171734 | |||||||
| RefSeq | protein | NM_058481.9 | |||||||
| NM_001306512.3 | |||||||||
| TrEMBL | UniProtAcc | Q95XN7 | |||||||
| W6RY98 | |||||||||
| UniProt_GCRP | UniProtAcc | Q95XN7 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:41 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ubc | ||||||||
| Allele (86) | |||||||||
| Strain | WBStrain00003027 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00089145 | ||||||||
| 00089146 | |||||||||
| 00089147 | |||||||||
| 00089148 | |||||||||
| 00089149 | |||||||||
| 00089150 | |||||||||
| 00089151 | |||||||||
| Ortholog (40) | |||||||||
| Paralog (18) | |||||||||
| Structured_description | Concise_description | ubc-3 encodes an E2 ubiquitin-conjugating enzyme orthologous to Saccharomyces cerevisiae and human CDC34 (OMIM:603731) which are involved in regulating protein stability during G1 and G2 cell cycle phase transitions; by homology, UBC-3 is likely required for covalent attachment of ubiquitin to select target proteins to facilitate their degradation; however, as loss of UBC-3 activity via RNA-mediated interference (RNAi) does not result in any abnormalities, the precise role of UBC-3 in C. elegans development and/or behavior is not yet known. | Paper_evidence | WBPaper00005337 | |||||
| WBPaper00005654 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable ubiquitin conjugating enzyme activity. Predicted to be involved in protein polyubiquitination and ubiquitin-dependent protein catabolic process. Is an ortholog of human CDC34 (cell division cycle 34, ubiqiutin conjugating enzyme) and UBE2R2 (ubiquitin conjugating enzyme E2 R2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y71G12B.15a | |||||||
| Y71G12B.15b | |||||||||
| Corresponding_CDS_history | Y71G12B.15:wp142 | ||||||||
| Corresponding_transcript | Y71G12B.15a.1 | ||||||||
| Y71G12B.15b.1 | |||||||||
| Other_sequence (70) | |||||||||
| Associated_feature | WBsf643056 | ||||||||
| WBsf643057 | |||||||||
| WBsf654769 | |||||||||
| WBsf980945 | |||||||||
| WBsf982738 | |||||||||
| WBsf982739 | |||||||||
| WBsf1009241 | |||||||||
| WBsf1009242 | |||||||||
| WBsf217235 | |||||||||
| WBsf217236 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00004816 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00116882 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00082840 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00058201 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00082830 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00094645 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram805 | ||||||||
| Expr7109 | |||||||||
| Expr1024386 | |||||||||
| Expr1032785 | |||||||||
| Expr1161618 | |||||||||
| Expr2017713 | |||||||||
| Expr2035851 | |||||||||
| Drives_construct | WBCnstr00003527 | ||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (109) | |||||||||
| Interaction (76) | |||||||||
| Map_info | Map | I | Position | -13.3167 | |||||
| Positive | Positive_clone | Y71G12B | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference (11) | |||||||||
| Remark | Sequence connection from [Jones D, Crowe E, Stevens TA, Candido EPM], 02/06/10 krb. | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| [200811 gw3] Modified Map position as it was a reverse physical that could not be fixed by automated methods. (-13.3727) | |||||||||
| Method | Gene |
