WormBase Tree Display for Gene: WBGene00006585
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WBGene00006585 | SMap | S_parent | Sequence | T20B3 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | tni-3 | Person_evidence | WBPerson300 | |||||
Sequence_name | T20B3.2 | ||||||||
Molecular_name | T20B3.2 | ||||||||
T20B3.2.1 | |||||||||
CE20087 | |||||||||
Other_name | CELE_T20B3.2 | Accession_evidence | NDB | BX284605 | |||||
Public_name | tni-3 | ||||||||
DB_info | Database | AceView | gene | 5R314 | |||||
WormQTL | gene | WBGene00006585 | |||||||
WormFlux | gene | WBGene00006585 | |||||||
NDB | locus_tag | CELE_T20B3.2 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00006585|UniProtKB=Q9XUN9 | |||||||
family | PTHR13738 | ||||||||
NCBI | gene | 180127 | |||||||
RefSeq | protein | NM_074849.9 | |||||||
SwissProt | UniProtAcc | Q9XUN9 | |||||||
TREEFAM | TREEFAM_ID | TF313374 | |||||||
UniProt_GCRP | UniProtAcc | Q9XUN9 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:41 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | tni | ||||||||
Allele (63) | |||||||||
Strain | WBStrain00049392 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (11) | |||||||||
Ortholog (47) | |||||||||
Paralog | WBGene00006584 | Caenorhabditis elegans | From_analysis | Panther | |||||
WormBase-Compara | |||||||||
WBGene00006764 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00006586 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
Structured_description | Concise_description | tni-3 encodes one of the four elegans troponin I genes; tni-3 is required for coordinated movement, normal body and muscle morphology and for the proper contractions of the vulva and anus; CeTNI-3 interacts with both the body wall and pharynx troponin C; tni-3 is strongly expressed in body wall, head and vulval muscles. | Paper_evidence | WBPaper00025009 | |||||
Curator_confirmed | WBPerson324 | ||||||||
Date_last_updated | 29 Jan 2007 00:00:00 | ||||||||
Automated_description | Enables troponin C binding activity. Involved in egg-laying behavior; muscle contraction; and post-embryonic body morphogenesis. Located in sarcomere. Expressed in body wall musculature; non-striated muscle; rectal muscle; and in male. Is an ortholog of human TNNI1 (troponin I1, slow skeletal type). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed (2) | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | T20B3.2 | |||||||
Corresponding_transcript | T20B3.2.1 | ||||||||
Other_sequence (66) | |||||||||
Associated_feature (3) | |||||||||
Experimental_info | RNAi_result | WBRNAi00033405 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00061229 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00077598 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00053595 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00066673 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00078124 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00078123 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00018885 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00066586 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern (11) | |||||||||
Drives_construct | WBCnstr00012212 | ||||||||
WBCnstr00012216 | |||||||||
WBCnstr00034288 | |||||||||
Construct_product | WBCnstr00013929 | ||||||||
WBCnstr00034288 | |||||||||
Microarray_results (20) | |||||||||
Expression_cluster (201) | |||||||||
Interaction (31) | |||||||||
Map_info (3) | |||||||||
Reference (11) | |||||||||
Remark | Sequence connection from [Priest J, Allen TS]. krb 13/11/01 | ||||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |