WormBase Tree Display for Gene: WBGene00006539
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WBGene00006539 | SMap | S_parent | Sequence | CHROMOSOME_V | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | tbb | ||||||
Allele (25) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (17) | |||||||
Ortholog (18) | |||||||
Paralog (16) | |||||||
Structured_description | Automated_description | Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Involved in PERK-mediated unfolded protein response. Predicted to be located in cytoplasm and microtubule. Expressed in pharynx. Human ortholog(s) of this gene implicated in complex cortical dysplasia with other brain malformations 1 and congenital fibrosis of the extraocular muscles 3A. Is an ortholog of several human genes including TUBB3 (tubulin beta 3 class III); TUBB6 (tubulin beta 6 class V); and TUBB8B (tubulin beta 8B). | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Disease_info | Potential_model | DOID:0090137 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:20772) | ||
DOID:0081017 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:20772) | ||||
EFO:MONDO:0014769 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:20773) | ||||
Molecular_info | Corresponding_CDS | T04H1.9 | |||||
Corresponding_CDS_history | T04H1.9:wp121 | ||||||
Corresponding_transcript | T04H1.9.1 | ||||||
T04H1.9.2 | |||||||
Other_sequence | BM033631.1 | ||||||
Associated_feature | WBsf232623 | ||||||
WBsf232624 | |||||||
Experimental_info | RNAi_result | WBRNAi00112763 | Inferred_automatically | RNAi_primary | |||
WBRNAi00052423 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00113316 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00076645 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00035155 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00112764 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00113143 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00113087 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00018163 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr12995 | ||||||
Expr1019125 | |||||||
Expr1032688 | |||||||
Expr1156047 | |||||||
Expr2035455 | |||||||
Drives_construct | WBCnstr00023113 | ||||||
WBCnstr00034314 | |||||||
Construct_product | WBCnstr00034314 | ||||||
Microarray_results (18) | |||||||
Expression_cluster (366) | |||||||
Interaction (64) | |||||||
Map_info | Map | V | Position | 3.96132 | Error | 0.002851 | |
Positive | Positive_clone | T04H1 | Inferred_automatically | From CDS info | |||
From sequence, transcript, pseudogene data | |||||||
Mapping_data | Multi_point | 5483 | |||||
5284 | |||||||
5624 | |||||||
Pseudo_map_position | |||||||
Reference | WBPaper00028194 | ||||||
WBPaper00052083 | |||||||
WBPaper00055090 | |||||||
WBPaper00058665 | |||||||
WBPaper00059214 | |||||||
WBPaper00059604 | |||||||
WBPaper00062599 | |||||||
WBPaper00064215 | |||||||
WBPaper00064957 | |||||||
Remark | Sequence connection from [Gogonea CB, Siddiqui SS] | ||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||
Method | Gene |