WormBase Tree Display for Gene: WBGene00006504
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| WBGene00006504 | SMap | S_parent | Sequence | R13A1 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | kcc-1 | Person_evidence | WBPerson2369 | |||||
| WBPerson330 | |||||||||
| Sequence_name | R13A1.2 | ||||||||
| Molecular_name (15) | |||||||||
| Other_name | tag-158 | ||||||||
| CELE_R13A1.2 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | kcc-1 | ||||||||
| DB_info | Database | AceView | gene | 4H981 | |||||
| WormQTL | gene | WBGene00006504 | |||||||
| WormFlux | gene | WBGene00006504 | |||||||
| NDB | locus_tag | CELE_R13A1.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006504|UniProtKB=S6FWN4 | |||||||
| family | PTHR11827 | ||||||||
| NCBI | gene | 177495 | |||||||
| RefSeq | protein | NM_001307143.2 | |||||||
| NM_001306919.3 | |||||||||
| NM_001306918.3 | |||||||||
| NM_001380315.1 | |||||||||
| NM_001306917.3 | |||||||||
| TrEMBL | UniProtAcc | S6F510 | |||||||
| S6FCX2 | |||||||||
| S6FWN4 | |||||||||
| N1NVB5 | |||||||||
| N1NV09 | |||||||||
| UniProt_GCRP | UniProtAcc | S6FWN4 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:40 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 02 Feb 2006 09:28:57 | WBPerson2970 | Name_change | CGC_name | kcc-1 | ||||
| Other_name | tag-158 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | kcc | ||||||||
| Allele (91) | |||||||||
| Strain | WBStrain00035802 | ||||||||
| WBStrain00035857 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (19) | |||||||||
| Ortholog (41) | |||||||||
| Paralog | WBGene00019205 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00017350 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00020207 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00012543 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00015131 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00019289 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Enables potassium:chloride symporter activity. Involved in chloride transmembrane transport and potassium ion transmembrane transport. Predicted to be located in plasma membrane. Expressed in several structures, including hermaphrodite distal tip cell; pharyngeal muscle cell; tail neurons; ventral nerve cord; and vulva. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | R13A1.2a | |||||||
| R13A1.2b | |||||||||
| R13A1.2c | |||||||||
| R13A1.2d | |||||||||
| R13A1.2e | |||||||||
| Corresponding_CDS_history | R13A1.2:wp237 | ||||||||
| Corresponding_transcript | R13A1.2a.1 | ||||||||
| R13A1.2b.1 | |||||||||
| R13A1.2c.1 | |||||||||
| R13A1.2d.1 | |||||||||
| R13A1.2e.1 | |||||||||
| Other_sequence (46) | |||||||||
| Associated_feature | WBsf996908 | ||||||||
| WBsf228515 | |||||||||
| WBsf228516 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00000826 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00051878 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00078392 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00051877 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00051881 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00034907 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00017810 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00034909 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00017813 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00017814 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr8770 | ||||||||
| Expr1027848 | |||||||||
| Expr1032664 | |||||||||
| Expr1155534 | |||||||||
| Expr2012910 | |||||||||
| Expr2031144 | |||||||||
| Drives_construct | WBCnstr00013509 | ||||||||
| WBCnstr00034333 | |||||||||
| Construct_product | WBCnstr00034333 | ||||||||
| Microarray_results (39) | |||||||||
| Expression_cluster (145) | |||||||||
| Interaction (29) | |||||||||
| Map_info | Map | IV | Position | 3.29767 | Error | 0.001867 | |||
| Positive | Positive_clone | R13A1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00003235 | ||||||||
| WBPaper00018324 | |||||||||
| WBPaper00035082 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00041771 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00058440 | |||||||||
| WBPaper00064809 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
