WormBase Tree Display for Gene: WBGene00006503
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| WBGene00006503 | SMap | S_parent | Sequence | W06D4 | |||
|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||
| Name | CGC_name | snx-3 | Person_evidence | WBPerson4055 | |||
| Sequence_name | W06D4.5 | ||||||
| Molecular_name | W06D4.5 | ||||||
| W06D4.5.1 | |||||||
| CE16547 | |||||||
| Other_name | tag-157 | Person_evidence | WBPerson201 | ||||
| CELE_W06D4.5 | Accession_evidence | NDB | BX284601 | ||||
| Public_name | snx-3 | ||||||
| DB_info | Database | AceView | gene | 1J640 | |||
| WormQTL | gene | WBGene00006503 | |||||
| WormFlux | gene | WBGene00006503 | |||||
| NDB | locus_tag | CELE_W06D4.5 | |||||
| Panther | gene | CAEEL|WormBase=WBGene00006503|UniProtKB=Q9XW41 | |||||
| family | PTHR45963 | ||||||
| NCBI | gene | 189240 | |||||
| RefSeq | protein | NM_060036.4 | |||||
| TREEFAM | TREEFAM_ID | TF314980 | |||||
| TrEMBL | UniProtAcc | Q9XW41 | |||||
| UniProt_GCRP | UniProtAcc | Q9XW41 | |||||
| Species | Caenorhabditis elegans | ||||||
| History | Version_change (2) | ||||||
| Status | Live | ||||||
| Gene_info | Biotype | SO:0001217 | |||||
| Gene_class | snx | ||||||
| Allele (20) | |||||||
| Strain | WBStrain00035848 | ||||||
| RNASeq_FPKM (74) | |||||||
| GO_annotation (11) | |||||||
| Contained_in_operon | CEOP1528 | ||||||
| Ortholog (38) | |||||||
| Paralog | WBGene00003086 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||
| WBGene00004927 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
| WBGene00013354 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
| Structured_description | Automated_description | Predicted to enable phosphatidylinositol-3-phosphate binding activity. Predicted to be involved in endocytic recycling and late endosome to Golgi transport. Located in endosome. Expressed in several structures, including pharynx and rectal epithelial cell. Is an ortholog of human SNX12 (sorting nexin 12) and SNX3 (sorting nexin 3). | Paper_evidence | WBPaper00065943 | |||
| Curator_confirmed | WBPerson324 | ||||||
| WBPerson37462 | |||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
| Molecular_info | Corresponding_CDS | W06D4.5 | |||||
| Corresponding_transcript | W06D4.5.1 | ||||||
| Other_sequence (64) | |||||||
| Associated_feature | WBsf649439 | ||||||
| WBsf655252 | |||||||
| WBsf984566 | |||||||
| WBsf984567 | |||||||
| WBsf220027 | |||||||
| Experimental_info (7) | |||||||
| Map_info | Map | I | Position | 3.46031 | Error | 0.0066 | |
| Positive | Positive_clone | W06D4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
| Mapping_data | Multi_point | 4139 | |||||
| Pseudo_map_position | |||||||
| Reference (25) | |||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
| Previously in the rad gene class | |||||||
| Method | Gene |
