WormBase Tree Display for Gene: WBGene00006416
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| WBGene00006416 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | T13A10 | ||||||
| Identity | Version | 3 | |||||||
| Name | CGC_name | sams-5 | Person_evidence | WBPerson1711 | |||||
| Sequence_name | T13A10.11 | ||||||||
| Molecular_name | T13A10.11a | ||||||||
| T13A10.11a.1 | |||||||||
| CE30175 | |||||||||
| T13A10.11a.2 | |||||||||
| T13A10.11b | |||||||||
| Other_name | tag-32 | Person_evidence | WBPerson201 | ||||||
| CELE_T13A10.11 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | sams-5 | ||||||||
| DB_info | Database (14) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:40 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 28 May 2004 14:19:55 | WBPerson1971 | Event | Acquires_merge | WBGene00020470 | ||||
| 3 | 10 Sep 2008 16:37:04 | WBPerson2970 | Name_change | CGC_name | sams-5 | ||||
| Other_name | tag-32 | ||||||||
| Acquires_merge | WBGene00020470 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | sams | ||||||||
| Allele (80) | |||||||||
| Strain | WBStrain00035607 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (14) | |||||||||
| Ortholog (42) | |||||||||
| Paralog | WBGene00008205 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00015538 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00015540 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable methionine adenosyltransferase activity. Predicted to be involved in S-adenosylmethionine biosynthetic process. Predicted to be located in cytosol. Expressed in MI neuron. Human ortholog(s) of this gene implicated in hypermethioninemia and lung cancer. Is an ortholog of human MAT1A (methionine adenosyltransferase 1A) and MAT2A (methionine adenosyltransferase 2A). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:1324 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:6904) | ||||
| DOID:0050544 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:6903) | ||||||
| Molecular_info | Corresponding_CDS | T13A10.11a | |||||||
| Corresponding_CDS_history | T13A10.11b:wp240 | ||||||||
| Corresponding_transcript | T13A10.11b | ||||||||
| T13A10.11a.1 | |||||||||
| T13A10.11a.2 | |||||||||
| Other_sequence (99) | |||||||||
| Associated_feature | WBsf651841 | ||||||||
| WBsf1017500 | |||||||||
| WBsf230148 | |||||||||
| Experimental_info | RNAi_result (18) | ||||||||
| Expr_pattern | Chronogram39 | ||||||||
| Chronogram1065 | |||||||||
| Expr6686 | |||||||||
| Expr6687 | |||||||||
| Expr9881 | |||||||||
| Expr1013138 | |||||||||
| Expr1032605 | |||||||||
| Expr1156819 | |||||||||
| Expr2015589 | |||||||||
| Expr2033824 | |||||||||
| Drives_construct | WBCnstr00003738 | ||||||||
| WBCnstr00003983 | |||||||||
| WBCnstr00007652 | |||||||||
| Regulate_expr_cluster | WBPaper00065005:sams-5(RNAi)_downregulated | ||||||||
| WBPaper00065005:sams-5(RNAi)_upregulated | |||||||||
| Microarray_results (27) | |||||||||
| Expression_cluster (254) | |||||||||
| Interaction (108) | |||||||||
| Map_info | Map | IV | Position | 3.11769 | Error | 0.00136 | |||
| Positive | Positive_clone | T13A10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4509 | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00028451 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00042204 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00060612 | |||||||||
| WBPaper00061357 | |||||||||
| WBPaper00062291 | |||||||||
| WBPaper00063813 | |||||||||
| Remark | Gene name created from parsing 'genotype' field from CGC strain information | CGC_data_submission | |||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
