WormBase Tree Display for Gene: WBGene00006375
expand all nodes | collapse all nodes | view schema
WBGene00006375 | Evidence | CGC_data_submission | |||||
---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | F26D2 | ||||
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | syp | ||||||
Allele (63) | |||||||
Strain | WBStrain00000290 | ||||||
WBStrain00034785 | |||||||
WBStrain00034786 | |||||||
WBStrain00051119 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00020833 | ||||||
00020834 | |||||||
00020835 | |||||||
00020836 | |||||||
00020837 | |||||||
00020838 | |||||||
00020839 | |||||||
00020840 | |||||||
00020841 | |||||||
Ortholog | WBGene00057339 | Caenorhabditis remanei | From_analysis | OMA | |||
TreeFam | |||||||
Inparanoid_8 | |||||||
WBGene00025487 | Caenorhabditis briggsae | From_analysis | Hillier-set | ||||
OrthoMCL | |||||||
OMA | |||||||
Inparanoid_8 | |||||||
WBGene00127788 | Caenorhabditis japonica | From_analysis | OMA | ||||
Inparanoid_8 | |||||||
chrV_pilon.g17139 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
Structured_description | Concise_description | syp-1 encodes a coiled-coil protein; syp-1 activity is required for stabilizing homologous associations between paired meiotic prophase chromosomes and for promoting crossover recombination; SYP-1 is a synaptonemal complex component that localizes to the central element that forms between paired homologous pachytene chromosomes. | Paper_evidence | WBPaper00005462 | |||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 16 Mar 2009 00:00:00 | ||||||
Automated_description | Enables protein homodimerization activity. Involved in positive regulation of reciprocal meiotic recombination; regulation of chromosome segregation; and synaptonemal complex assembly. Located in central element. Expressed in germ line. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | F26D2.2 | |||||
Corresponding_CDS_history | F26D2.2:wp100 | ||||||
Corresponding_transcript | F26D2.2.1 | ||||||
Other_sequence | GR977571.1 | ||||||
SC00265 | |||||||
CBC02102_1 | |||||||
CBC06172_1 | |||||||
CJC04954_1 | |||||||
Associated_feature | WBsf233110 | ||||||
Experimental_info | RNAi_result (31) | ||||||
Expr_pattern (11) | |||||||
Drives_construct | WBCnstr00034384 | ||||||
Construct_product | WBCnstr00016721 | ||||||
WBCnstr00034384 | |||||||
Antibody (22) | |||||||
Microarray_results (30) | |||||||
Expression_cluster (147) | |||||||
Interaction (126) | |||||||
Map_info | Map | V | Position | 10.0424 | Error | 0.001284 | |
Positive | Positive_clone | F26D2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Mapping_data | Multi_point | 4776 | |||||
5344 | |||||||
Pseudo_map_position | |||||||
Reference (88) | |||||||
Remark | Sequence connection from [Villeneuve AM] | ||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||
[140610 pad] Gene was missing Acquires_merge Event history data so inferred from Acquires_merge tag. | |||||||
Method | Gene |