WormBase Tree Display for Gene: WBGene00006047
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| WBGene00006047 | SMap | S_parent | Sequence | C55C2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | ssp-19 | Person_evidence | WBPerson680 | |||||
| Sequence_name | C55C2.2 | ||||||||
| Molecular_name | C55C2.2 | ||||||||
| C55C2.2.1 | |||||||||
| CE09025 | |||||||||
| Other_name | CELE_C55C2.2 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | ssp-19 | ||||||||
| DB_info | Database | AceView | gene | 1D131 | |||||
| WormQTL | gene | WBGene00006047 | |||||||
| WormFlux | gene | WBGene00006047 | |||||||
| NDB | locus_tag | CELE_C55C2.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006047|UniProtKB=O01829 | |||||||
| family | PTHR22947 | ||||||||
| NCBI | gene | 171813 | |||||||
| RefSeq | protein | NM_058599.5 | |||||||
| SwissProt | UniProtAcc | O01829 | |||||||
| UniProt_GCRP | UniProtAcc | O01829 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:39 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ssp | ||||||||
| Allele (21) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00025874 | ||||||||
| Ortholog (35) | |||||||||
| Paralog (33) | |||||||||
| Structured_description | Concise_description | ssp-19 encodes a member of the C. elegans sperm-specific protein (ssp) family; loss of ssp-19 function via RNAi has been reported to result in a moderate increase of fat content; in situ hybridization experiments detect ssp-19 mRNA in the spermatheca; the SSP-19 crystal structure has been determined and reveals monomer-monomer interactions between SSP-19 molecules to be strikingly different from equivalent interactions between MSP (major sperm protein) monomers. | Paper_evidence | WBPaper00005655 | |||||
| WBPaper00024402 | |||||||||
| WBPaper00027758 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 25 Jun 2008 00:00:00 | ||||||||
| Automated_description | Enables protein homodimerization activity. Expressed in spermatheca. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C55C2.2 | |||||||
| Corresponding_transcript | C55C2.2.1 | ||||||||
| Other_sequence (14) | |||||||||
| Associated_feature | WBsf1009358 | ||||||||
| WBsf217313 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00003246 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00043236 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00007327 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00022555 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr4167 | ||||||||
| Expr1011825 | |||||||||
| Expr1147215 | |||||||||
| Expr2016934 | |||||||||
| Expr2035081 | |||||||||
| Drives_construct | WBCnstr00034577 | ||||||||
| Construct_product | WBCnstr00034577 | ||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (186) | |||||||||
| Interaction (221) | |||||||||
| Map_info | Map | I | Position | -8.40912 | |||||
| Positive | Positive_clone | C55C2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00024402 | ||||||||
| WBPaper00024421 | |||||||||
| WBPaper00027301 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
