WormBase Tree Display for Gene: WBGene00005833
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| WBGene00005833 | Evidence | Person_evidence | WBPerson522 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C25F9 | ||||||
| Identity | Version | 2 | |||||||
| Name | CGC_name | srw-86 | Person_evidence | WBPerson522 | |||||
| Sequence_name | C25F9.7 | ||||||||
| Molecular_name | C25F9.7 | ||||||||
| C25F9.7.1 | |||||||||
| CE40914 | |||||||||
| Other_name | CELE_C25F9.7 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | srw-86 | ||||||||
| DB_info | Database | AceView | gene | 5T876 | |||||
| WormQTL | gene | WBGene00005833 | |||||||
| WormFlux | gene | WBGene00005833 | |||||||
| NDB | locus_tag | CELE_C25F9.7 | |||||||
| NCBI | gene | 180271 | |||||||
| RefSeq | protein | NM_075374.5 | |||||||
| TrEMBL | UniProtAcc | O62076 | |||||||
| UniProt_GCRP | UniProtAcc | O62076 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:39 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 03 May 2007 11:53:32 | WBPerson4025 | Event | Split_into | WBGene00045413 | ||||
| Split_into | WBGene00045413 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | srw | ||||||||
| Allele (45) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog | chrV_pilon.g17881 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| Paralog | WBGene00007726 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00045411 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00045412 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Enriched in XXX cell; dopaminergic neurons; head mesodermal cell; intestine; and sensory neurons based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-2; skn-1; and glp-1 based on microarray and RNA-seq studies. Is affected by sixteen chemicals including Ethanol; Sodium Chloride; and Psoralens based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C25F9.7 | |||||||
| Corresponding_CDS_history | C25F9.7:wp175 | ||||||||
| Corresponding_transcript | C25F9.7.1 | ||||||||
| Associated_feature | WBsf717289 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00041204 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00019967 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1145242 | ||||||||
| Expr2016789 | |||||||||
| Expr2034968 | |||||||||
| Microarray_results | SMD_Y116F11A.R | ||||||||
| A_12_P151325 | |||||||||
| Aff_Y116F11.U | |||||||||
| GPL19516_CGZ0005962 | |||||||||
| GPL21109_C25F9.7 | |||||||||
| GPL3518_CE17471 | |||||||||
| Expression_cluster (187) | |||||||||
| Interaction | WBInteraction000317229 | ||||||||
| WBInteraction000320287 | |||||||||
| WBInteraction000379525 | |||||||||
| WBInteraction000551322 | |||||||||
| Map_info | Map | V | Position | 21.698 | Error | 0.073507 | |||
| Positive | Positive_clone | C25F9 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
