WormBase Tree Display for Gene: WBGene00005805
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| WBGene00005805 | Evidence | Person_evidence | WBPerson522 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | H24D24 | |||||||
| Identity | Version | 2 | ||||||||
| Name | CGC_name | srw-58 | Person_evidence | WBPerson522 | ||||||
| Sequence_name | H24D24.2 | |||||||||
| Molecular_name | H24D24.2 | |||||||||
| Other_name | CELE_H24D24.2 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | srw-58 | |||||||||
| DB_info | Database | AceView | gene | 5Q426 | ||||||
| WormQTL | gene | WBGene00005805 | ||||||||
| WormFlux | gene | WBGene00005805 | ||||||||
| NDB | locus_tag | CELE_H24D24.2 | ||||||||
| NCBI | gene | 186772 | ||||||||
| Species | Caenorhabditis elegans | |||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:39 | WBPerson1971 | Event | Imported | Initial conversion from geneace | |||
| 2 | 18 Feb 2016 15:22:10 | WBPerson4025 | Event | Changed_class | CDS | Pseudogene | ||||
| Status | Live | |||||||||
| Gene_info | Biotype | SO:0000336 | ||||||||
| Gene_class | srw | |||||||||
| Allele (62) | ||||||||||
| RNASeq_FPKM (74) | ||||||||||
| Ortholog | WBGene00042714 | Caenorhabditis briggsae | From_analysis | OMA | ||||||
| WBGene00042940 | Caenorhabditis briggsae | From_analysis | OMA | |||||||
| WBGene00145793 | Caenorhabditis brenneri | From_analysis | TreeFam | |||||||
| WBGene00056593 | Caenorhabditis remanei | From_analysis | TreeFam | |||||||
| WBGene00120105 | Caenorhabditis japonica | From_analysis | TreeFam | |||||||
| Paralog (112) | ||||||||||
| Structured_description | Automated_description | Is affected by several genes including sir-2.1; prg-1; and ain-1 based on tiling array and microarray studies. Is affected by aldicarb based on microarray studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | |||||||||
| WBPerson37462 | ||||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
| Molecular_info | Corresponding_CDS_history | H24D24.2:wp252 | ||||||||
| Corresponding_pseudogene | H24D24.2 | |||||||||
| Experimental_info | Expr_pattern | Expr1011401 | ||||||||
| Expr1153199 | ||||||||||
| Microarray_results | SMD_H24D24.2 | |||||||||
| 179718_at | ||||||||||
| A_12_P104510 | ||||||||||
| Aff_H24D24.2 | ||||||||||
| GPL14144_H24D24.2_776-835_0.934_2_A | ||||||||||
| GPL3518_CE18822 | ||||||||||
| GPL8304_CE_WBGene00005805_A | ||||||||||
| GPL8673_H24D24_2P00518 | ||||||||||
| GPL9450_H24D24.2 | ||||||||||
| cea2.i.40725 | ||||||||||
| Expression_cluster | WBPaper00031040:TGF-beta_adult_downregulated | |||||||||
| WBPaper00038061:aldicarb_downregulated | ||||||||||
| WBPaper00045217:prg-1_progressively_regulated | ||||||||||
| WBPaper00045420:fertilization_downregulated_transcript | ||||||||||
| WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C | ||||||||||
| WBPaper00061527:srj-42-srw-113 | ||||||||||
| WBPaper00025141:N2_Expressed_Genes | ||||||||||
| WBPaper00026929:sir-2.1_overexpression_regulated | ||||||||||
| WBPaper00031252:AIN-1_IP_enriched | ||||||||||
| WBPaper00040603:tdp-1(lf)_up_vs_N2_FC_1.2 | ||||||||||
| Interaction (16) | ||||||||||
| Map_info | Map | V | Position | 9.29676 | Error | 5.1e-05 | ||||
| Positive | Positive_clone | H24D24 | Inferred_automatically | From CDS info | ||||||
| From sequence, transcript, pseudogene data | ||||||||||
| Pseudo_map_position | ||||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
