WormBase Tree Display for Gene: WBGene00005647
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| WBGene00005647 | SMap | S_parent | Sequence | C03G6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | srp-6 | Person_evidence | WBPerson1460 | |||||
| Sequence_name | C03G6.19 | ||||||||
| Molecular_name | C03G6.19 | ||||||||
| C03G6.19.1 | |||||||||
| CE27579 | |||||||||
| Other_name | CELE_C03G6.19 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | srp-6 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:38 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | srp | ||||||||
| Allele (30) | |||||||||
| Strain | WBStrain00031368 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00018173 | ||||||||
| 00018174 | |||||||||
| 00018175 | |||||||||
| 00018176 | |||||||||
| 00018177 | |||||||||
| 00113766 | |||||||||
| 00113767 | |||||||||
| Ortholog (74) | |||||||||
| Paralog | WBGene00005642 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00005643 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00005644 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00005649 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00005648 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00005651 | Caenorhabditis elegans | From_analysis | modENCODE_Pseudogenes | ||||||
| Structured_description | Concise_description | srp-6 encodes a functional serpin (serine protease inhibitor) | Paper_evidence | WBPaper00010247 | |||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 09 Aug 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable peptidase activity and serine-type endopeptidase inhibitor activity. Predicted to be involved in proteolysis. Predicted to be located in extracellular space. Expressed in hermaphrodite gonad; intestine; pharyngeal-intestinal valve; socket cell; and vulva. Human ortholog(s) of this gene implicated in several diseases, including IgA glomerulonephritis; autosomal recessive nonsyndromic deafness 91; and familial encephalopathy with neuroserpin inclusion bodies. Is an ortholog of several human genes including SERPINB1 (serpin family B member 1); SERPINB8 (serpin family B member 8); and SERPINB9 (serpin family B member 9). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:2986 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:13902) | ||||
| DOID:0050831 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:13902) | ||||||
| DOID:0060283 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:8952) | ||||||
| DOID:0110536 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:8950) | ||||||
| Molecular_info | Corresponding_CDS | C03G6.19 | |||||||
| Corresponding_transcript | C03G6.19.1 | ||||||||
| Other_sequence (20) | |||||||||
| Associated_feature | WBsf652773 | ||||||||
| WBsf669118 | |||||||||
| WBsf233943 | |||||||||
| WBsf233944 | |||||||||
| Experimental_info | RNAi_result (14) | ||||||||
| Expr_pattern | Expr4898 | ||||||||
| Expr1024890 | |||||||||
| Expr1032522 | |||||||||
| Expr1143651 | |||||||||
| Expr2016605 | |||||||||
| Expr2034796 | |||||||||
| Drives_construct | WBCnstr00012318 | ||||||||
| WBCnstr00034821 | |||||||||
| Construct_product | WBCnstr00012318 | ||||||||
| WBCnstr00034821 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (171) | |||||||||
| Interaction (44) | |||||||||
| Map_info | Map | V | Position | 0.747837 | Error | 0.001242 | |||
| Positive | Positive_clone | C03G6 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4701 | |||||||
| 4709 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (13) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
