WormBase Tree Display for Gene: WBGene00005644
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| WBGene00005644 | SMap | S_parent | Sequence | Y32G9A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | srp-3 | Person_evidence | WBPerson1460 | |||||
| Sequence_name | Y32G9A.4 | ||||||||
| Molecular_name | Y32G9A.4 | ||||||||
| Y32G9A.4.1 | |||||||||
| CE31100 | |||||||||
| Other_name | srp-4 | Person_evidence | WBPerson1460 | ||||||
| CELE_Y32G9A.4 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | srp-3 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:38 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Name_change | Other_name | srp-4 | |||||||
| 2 | 09 Nov 2011 14:14:35 | WBPerson2970 | Event | Acquires_merge | WBGene00005645 | ||||
| Acquires_merge | WBGene00005645 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | srp | ||||||||
| Allele (56) | |||||||||
| Strain | WBStrain00032016 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00012783 | ||||||||
| 00012784 | |||||||||
| 00012785 | |||||||||
| 00113764 | |||||||||
| 00113765 | |||||||||
| Ortholog (56) | |||||||||
| Paralog | WBGene00005642 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00005643 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00005649 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00005647 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00005648 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | srp-3 encodes a functional serpin (serine protease inhibitor) | Paper_evidence | WBPaper00010247 | |||||
| WBPaper00018166 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| Date_last_updated | 09 Aug 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable peptidase activity and serine-type endopeptidase inhibitor activity. Predicted to be involved in proteolysis. Predicted to be located in extracellular space. Expressed in body wall musculature; intestine; and muscle cell. Human ortholog(s) of this gene implicated in several diseases, including Alzheimer's disease; artery disease (multiple); autoimmune disease (multiple); and lung disease (multiple). Is an ortholog of human SERPINI1 (serpin family I member 1) and SERPINI2 (serpin family I member 2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model (60) | ||||||||
| Molecular_info | Corresponding_CDS | Y32G9A.4 | |||||||
| Corresponding_transcript | Y32G9A.4.1 | ||||||||
| Other_sequence | CJC00681_1 | ||||||||
| Name_isotig00370 | |||||||||
| FD514575.1 | |||||||||
| Tcir_isotig13422 | |||||||||
| FD513984.1 | |||||||||
| Tcol_isotig20348 | |||||||||
| CSC00197_1 | |||||||||
| CSC00354_1 | |||||||||
| Associated_feature | WBsf999417 | ||||||||
| WBsf231453 | |||||||||
| WBsf231454 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00055796 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr3870 | ||||||||
| Expr1016673 | |||||||||
| Expr1159330 | |||||||||
| Expr2016604 | |||||||||
| Drives_construct | WBCnstr00011705 | ||||||||
| Construct_product | WBCnstr00011705 | ||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (108) | |||||||||
| Interaction | WBInteraction000122908 | ||||||||
| WBInteraction000122917 | |||||||||
| WBInteraction000122924 | |||||||||
| WBInteraction000122928 | |||||||||
| WBInteraction000122930 | |||||||||
| WBInteraction000146458 | |||||||||
| WBInteraction000162398 | |||||||||
| WBInteraction000167358 | |||||||||
| WBInteraction000174380 | |||||||||
| WBInteraction000388095 | |||||||||
| Map_info | Map | V | Position | -16.7885 | Error | 0.019103 | |||
| Positive | Positive_clone | Y32G9A | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4861 | |||||||
| 4830 | |||||||||
| 4731 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00006476 | ||||||||
| WBPaper00010247 | |||||||||
| WBPaper00018166 | |||||||||
| WBPaper00026792 | |||||||||
| WBPaper00027205 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
