WormBase Tree Display for Gene: WBGene00005583

WBGene00005583 Evidence: Person_evidence: WBPerson522
  SMap: S_parent: Sequence: D2062
  Identity: Version: 1
    Name: CGC_name: sri-71 Person_evidence: WBPerson522
      Sequence_name: D2062.3
      Molecular_name: D2062.3
        D2062.3.1
        CE25835
      Other_name: CELE_D2062.3 Accession_evidence: NDB BX284602
      Public_name: sri-71
    DB_info: Database: AceView gene 2C917
        WormQTL gene WBGene00005583
        WormFlux gene WBGene00005583
        NDB locus_tag CELE_D2062.3
        Panther gene CAEEL|WormBase=WBGene00005583|UniProtKB=O16599
          family PTHR45830
        NCBI gene 191928
        RefSeq protein NM_001377725.1
        TREEFAM TREEFAM_ID TF315276
        TrEMBL UniProtAcc O16599
        UniProt_GCRP UniProtAcc O16599
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:38 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: sri
    Allele (104)
    RNASeq_FPKM (74)
    GO_annotation: 00028335
    Ortholog (12)
    Paralog (292)
    Structured_description: Automated_description: Predicted to be located in membrane. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: D2062.3
    Corresponding_CDS_history: D2062.3:wp274
    Corresponding_transcript: D2062.3.1
    Associated_feature: WBsf986988
      WBsf1011738
  Experimental_info: RNAi_result: WBRNAi00043490 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1019512
      Expr1147484
      Expr2016570
      Expr2034763
    Drives_construct: WBCnstr00034868
    Construct_product: WBCnstr00034868
    Microarray_results (14)
    Expression_cluster: WBPaper00033065:cyc-1(RNAi)_downregulated
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00042194:Tryptophan_downregulated
      WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:downregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00058955:heatshock_upregulated_CE
      WBPaper00061527:sre-33-ZK1025.1_8337
      WBPaper00027111:rrf-1(pk1417)_upregulated
    SAGE_tag: SAGE:tccacaattt Strand: Sense
        Unambiguously_mapped
      SAGE:aaaaatattt Strand: Antisense
      SAGE:caatatttaa Strand: Sense
        Unambiguously_mapped
      SAGE:actccttgag Strand: Antisense
    Interaction: WBInteraction000252451
      WBInteraction000274792
      WBInteraction000394396
  Map_info: Map: II Position: -12.2814 Error: 0.006521
    Positive: Positive_clone: D2062 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene