WormBase Tree Display for Gene: WBGene00005505
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WBGene00005505 | SMap | S_parent | Sequence | Y94A7B | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | srh-301 | Person_evidence | WBPerson522 | |||||
Sequence_name | Y94A7B.8 | ||||||||
Molecular_name | Y94A7B.8 | ||||||||
Y94A7B.8.1 | |||||||||
CE33004 | |||||||||
Other_name | CELE_Y94A7B.8 | Accession_evidence | NDB | BX284605 | |||||
Public_name | srh-301 | ||||||||
DB_info | Database | AceView | gene | 5S305 | |||||
WormQTL | gene | WBGene00005505 | |||||||
WormFlux | gene | WBGene00005505 | |||||||
NDB | locus_tag | CELE_Y94A7B.8 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00005505|UniProtKB=Q9GRU8 | |||||||
family | PTHR22941 | ||||||||
NCBI | gene | 190797 | |||||||
RefSeq | protein | NM_075099.3 | |||||||
TrEMBL | UniProtAcc | Q9GRU8 | |||||||
UniProt_GCRP | UniProtAcc | Q9GRU8 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:38 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | srh | ||||||||
Allele (109) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00092227 | ||||||||
Ortholog | WBGene00063793 | Caenorhabditis remanei | From_analysis | OMA | |||||
TreeFam | |||||||||
WBGene00063738 | Caenorhabditis remanei | From_analysis | OMA | ||||||
TreeFam | |||||||||
WBGene00138738 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
WBGene00086254 | Caenorhabditis remanei | From_analysis | TreeFam | ||||||
WBGene00111586 | Pristionchus pacificus | From_analysis | Inparanoid_8 | ||||||
CSP29.g12131 | Caenorhabditis becei | From_analysis | WormBase-Compara | ||||||
CSP39.g24702 | Caenorhabditis waitukubuli | From_analysis | WormBase-Compara | ||||||
Paralog (297) | |||||||||
Structured_description | Automated_description | Predicted to be located in membrane. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | Y94A7B.8 | |||||||
Corresponding_CDS_history | Y94A7B.8:wp92 | ||||||||
Corresponding_transcript | Y94A7B.8.1 | ||||||||
Other_sequence | CA840756.1 | ||||||||
Associated_feature | WBsf662184 | ||||||||
Experimental_info | RNAi_result | WBRNAi00058650 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1162069 | ||||||||
Drives_construct | WBCnstr00034921 | ||||||||
Construct_product | WBCnstr00034921 | ||||||||
Microarray_results (14) | |||||||||
Expression_cluster | WBPaper00037950:all-neurons_L1-larva_expressed | ||||||||
WBPaper00042477:rsr-2(RNAi)_upregulated_TilingArray | |||||||||
WBPaper00045420:fertilization_downregulated_transcript | |||||||||
WBPaper00053888:drh-3(rrr2)_downregulated | |||||||||
WBPaper00061527:sre-33-ZK1025.1_8337 | |||||||||
WBPaper00036123:Atrazine_regulated | |||||||||
WBPaper00046853:AOBr_M.aeruginosa-batch-culture_downregulated | |||||||||
Map_info | Map | V | Position | 13.2756 | Error | 0.006743 | |||
Positive | Positive_clone | Y94A7B | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |