WormBase Tree Display for Gene: WBGene00005374
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| WBGene00005374 | SMap | S_parent | Sequence | F20E11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | srh-158 | Person_evidence | WBPerson522 | |||||
| Sequence_name | F20E11.13 | ||||||||
| Molecular_name | F20E11.13 | ||||||||
| Other_name | CELE_F20E11.13 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | srh-158 | ||||||||
| DB_info | Database | AceView | gene | 5R923 | |||||
| WormQTL | gene | WBGene00005374 | |||||||
| NDB | locus_tag | CELE_F20E11.13 | |||||||
| NCBI | gene | 13217860 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:38 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0000336 | |||||||
| Gene_class | srh | ||||||||
| Allele (153) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Paralog | WBGene00005375 | Caenorhabditis elegans | From_analysis | modENCODE_Pseudogenes | |||||
| Structured_description | Automated_description | Is affected by daf-16; bet-1; and sir-2.1 based on RNA-seq and microarray studies. Is affected by Rifampin; allantoin; and Sirolimus based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS_history | F20E11.13:wp104 | |||||||
| Corresponding_pseudogene | F20E11.13 | ||||||||
| Experimental_info | Microarray_results | SMD_F20E11.13 | |||||||
| 172563_x_at | |||||||||
| A_12_P135815 | |||||||||
| A_12_P180265 | |||||||||
| Aff_F20E11.13 | |||||||||
| GPL19516_CGZ0017201 | |||||||||
| GPL21109_F20E11.13 | |||||||||
| Expression_cluster | WBPaper00048971:daf-16(mgDf50)_downregulated_L1 | ||||||||
| WBPaper00055354:Rifampicin-Allantoin_downregulated | |||||||||
| WBPaper00061527:sre-33-ZK1025.1_8337 | |||||||||
| WBPaper00064735:bet-1(RNAi)_vs_N2_downregulated | |||||||||
| WBPaper00065258:anchor-cell_enriched | |||||||||
| WBPaper00065835:Day5_vs_Day1_upregulated | |||||||||
| WBPaper00065835:Day11_vs_Day1_upregulated | |||||||||
| WBPaper00026929:sir-2.1_overexpression_regulated | |||||||||
| WBPaper00048989:eat-2(ad465)_rapamycin_upregulated | |||||||||
| Map_info | Map | V | Position | 12.904 | Error | 0.000271 | |||
| Positive | Positive_clone | F20E11 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
