WormBase Tree Display for Gene: WBGene00005149
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| WBGene00005149 | SMap | S_parent | Sequence | B0495 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | sre-1 | Person_evidence | WBPerson42 | |||||
| Sequence_name | B0495.1 | ||||||||
| Molecular_name | B0495.1 | ||||||||
| B0495.1.1 | |||||||||
| CE01759 | |||||||||
| Other_name | CELE_B0495.1 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | sre-1 | ||||||||
| DB_info | Database | AceView | gene | 2I1 | |||||
| WormQTL | gene | WBGene00005149 | |||||||
| WormFlux | gene | WBGene00005149 | |||||||
| NDB | locus_tag | CELE_B0495.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00005149|UniProtKB=Q09213 | |||||||
| family | PTHR23128 | ||||||||
| NCBI | gene | 191827 | |||||||
| RefSeq | protein | NM_063220.4 | |||||||
| SwissProt | UniProtAcc | Q09213 | |||||||
| TREEFAM | TREEFAM_ID | TF316213 | |||||||
| UniProt_GCRP | UniProtAcc | Q09213 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:37 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | sre | ||||||||
| Allele (15) | |||||||||
| Legacy_information | [C.elegansII] NMK. Encodes predicted serpentine receptor.28% identity to sre-2. sre-1:GFP expressed in sensory neurons ADL, ASJ (faint). [Troemel et al. 1995; CX] | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00052902 | ||||||||
| 00052903 | |||||||||
| 00113566 | |||||||||
| 00113567 | |||||||||
| Ortholog (22) | |||||||||
| Paralog (45) | |||||||||
| Structured_description | Concise_description | sre-1 encodes a putative seven transmembrane chemoreceptor; an SRE-1::GFP reporter is expressed in the ADL and ASJ amphid sensory neurons. | Paper_evidence | WBPaper00002314 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 11 Jul 2007 00:00:00 | ||||||||
| Automated_description | Predicted to be involved in sensory perception of chemical stimulus. Predicted to be located in membrane. Expressed in neurons. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | B0495.1 | |||||||
| Corresponding_CDS_history | B0495.1:wp140 | ||||||||
| Corresponding_transcript | B0495.1.1 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00009807 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00028170 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00039108 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr303 | ||||||||
| Expr7912 | |||||||||
| Expr13265 | |||||||||
| Expr1025206 | |||||||||
| Expr1143265 | |||||||||
| Expr2016273 | |||||||||
| Expr2034502 | |||||||||
| Marker59 | |||||||||
| Drives_construct | WBCnstr00001557 | ||||||||
| WBCnstr00007778 | |||||||||
| WBCnstr00009690 | |||||||||
| WBCnstr00011085 | |||||||||
| WBCnstr00012987 | |||||||||
| WBCnstr00035160 | |||||||||
| WBCnstr00040123 | |||||||||
| WBCnstr00040124 | |||||||||
| Construct_product | WBCnstr00011085 | ||||||||
| WBCnstr00035160 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (50) | |||||||||
| Interaction (18) | |||||||||
| Map_info | Map | II | Position | 0.533173 | Error | 0.003888 | |||
| Positive | Positive_clone | B0495 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00002314 | ||||||||
| WBPaper00003408 | |||||||||
| WBPaper00005612 | |||||||||
| WBPaper00005965 | |||||||||
| WBPaper00015440 | |||||||||
| WBPaper00028910 | |||||||||
| WBPaper00030829 | |||||||||
| WBPaper00049921 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
