WormBase Tree Display for Gene: WBGene00005028
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| WBGene00005028 | Evidence | Person_evidence | WBPerson522 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | AH6 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | sra-2 | Person_evidence | WBPerson42 | |||||
| Sequence_name | AH6.6 | ||||||||
| Molecular_name | AH6.6 | ||||||||
| AH6.6.1 | |||||||||
| CE01460 | |||||||||
| Other_name | CELE_AH6.6 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | sra-2 | ||||||||
| DB_info | Database | AceView | gene | 2J819 | |||||
| WormQTL | gene | WBGene00005028 | |||||||
| WormFlux | gene | WBGene00005028 | |||||||
| NDB | locus_tag | CELE_AH6.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00005028|UniProtKB=Q09204 | |||||||
| family | PTHR31357 | ||||||||
| NCBI | gene | 191773 | |||||||
| RefSeq | protein | NM_063643.1 | |||||||
| SwissProt | UniProtAcc | Q09204 | |||||||
| TREEFAM | TREEFAM_ID | TF316946 | |||||||
| UniProt_GCRP | UniProtAcc | Q09204 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:37 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | sra | ||||||||
| Allele (25) | |||||||||
| Legacy_information | [C.elegansII] NMK. Encodes predicted serpentine receptor.sra-1 to sra-9 clustered. [Troemel et al. 1995; CX] | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00052859 | ||||||||
| 00052860 | |||||||||
| 00052861 | |||||||||
| 00052862 | |||||||||
| 00052863 | |||||||||
| 00052864 | |||||||||
| 00113449 | |||||||||
| 00113450 | |||||||||
| 00113451 | |||||||||
| Ortholog (36) | |||||||||
| Paralog (36) | |||||||||
| Structured_description | Concise_description | sra-2 encodes a predicted chemosensory receptor. | Paper_evidence | WBPaper00002314 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 08 Oct 2008 00:00:00 | ||||||||
| Automated_description | Predicted to enable olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception. Predicted to be located in membrane. Expressed in body wall musculature; head; and head neurons. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | AH6.6 | |||||||
| Corresponding_transcript | AH6.6.1 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00009533 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00038624 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr5007 | ||||||||
| Expr13998 | |||||||||
| Expr1010420 | |||||||||
| Expr1142832 | |||||||||
| Expr2016142 | |||||||||
| Drives_construct | WBCnstr00004429 | ||||||||
| WBCnstr00035257 | |||||||||
| Construct_product | WBCnstr00035257 | ||||||||
| Microarray_results (14) | |||||||||
| Expression_cluster | WBPaper00032528:L3_depleted | ||||||||
| WBPaper00037950:hypodermis_L1-larva_expressed | |||||||||
| WBPaper00037950:intestine_L1-larva_expressed | |||||||||
| WBPaper00037950:pharyngeal-muscle_L1-larva_expressed | |||||||||
| WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray | |||||||||
| WBPaper00050514:CEBP-1_interacting | |||||||||
| WBPaper00061527:srj-21-srh-32 | |||||||||
| cgc4489_group_11 | |||||||||
| WBPaper00036123:Cadmium_regulated | |||||||||
| SAGE_tag | SAGE:gaatcgaagc | Strand | Sense | ||||||
| Unambiguously_mapped | |||||||||
| SAGE:acaaaacaaa | Strand | Antisense | |||||||
| Interaction (12) | |||||||||
| Map_info | Map | II | Position | 1.51179 | Error | 0.002832 | |||
| Positive | Positive_clone | AH6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00002314 | ||||||||
| WBPaper00005965 | |||||||||
| WBPaper00015440 | |||||||||
| WBPaper00024667 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
