WormBase Tree Display for Gene: WBGene00005002
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WBGene00005002 | Evidence | Author_evidence | Patthy L | ||||
---|---|---|---|---|---|---|---|
Hodgkin JA | |||||||
SMap | S_parent | Sequence | C54G6 | ||||
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | spp | ||||||
Allele (14) | |||||||
RNASeq_FPKM (74) | |||||||
Contained_in_operon | CEOP1788 | ||||||
Ortholog (24) | |||||||
Paralog (12) | |||||||
Structured_description | Automated_description | Enriched in DA neuron; VA neuron; intestine; and pharyngeal muscle cell based on tiling array and RNA-seq studies. Is affected by several genes including daf-16; daf-2; and dpy-10 based on microarray; RNA-seq; tiling array; and proteomic studies. Is affected by twenty-five chemicals including D-glucose; Psoralens; and allantoin based on RNA-seq; microarray; and proteomic studies. Is predicted to encode a protein with the following domains: Saposin B type domain and Saposin-like. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | C54G6.5 | |||||
Corresponding_transcript | C54G6.5.1 | ||||||
Other_sequence | CJC04076_1 | ||||||
Associated_feature | WBsf217174 | ||||||
Experimental_info | RNAi_result | WBRNAi00094857 | Inferred_automatically | RNAi_primary | |||
WBRNAi00004581 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00030163 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00043188 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1017448 | ||||||
Expr1147166 | |||||||
Expr2016072 | |||||||
Expr2034308 | |||||||
Microarray_results (17) | |||||||
Expression_cluster (290) | |||||||
Interaction | WBInteraction000521056 | ||||||
WBInteraction000524321 | |||||||
WBInteraction000548220 | |||||||
Map_info | Map | I | Position | -17.4035 | Error | 0.002255 | |
Positive | Positive_clone | C54G6 | Inferred_automatically (2) | ||||
Pseudo_map_position | |||||||
Reference | WBPaper00024209 | ||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |