WormBase Tree Display for Gene: WBGene00004986
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WBGene00004986 | SMap | S_parent | Sequence | T07C4 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | spp | ||||||
Allele | WBVar01500260 | ||||||
WBVar01499545 | |||||||
WBVar00407186 | |||||||
WBVar01499774 | |||||||
WBVar02019092 | |||||||
WBVar00093807 | |||||||
WBVar00252252 | |||||||
WBVar00855993 | |||||||
Strain | WBStrain00032729 | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (14) | |||||||
Contained_in_operon | CEOP3839 | ||||||
Ortholog (22) | |||||||
Paralog | WBGene00004997 | Caenorhabditis elegans | From_analysis | TreeFam | |||
Inparanoid_8 | |||||||
WormBase-Compara | |||||||
Structured_description | Concise_description | spp-1 encodes a caenopore, a saposin (B) domain-containing protein that is a member of the saposin-like protein (SAPLIP) superfamily containing mammalian NK-lysin and granulysin and the protozoan amoebapore-like proteins; SPP-1 exhibits antibacterial activity in vitro and its expression in vivo is regulated by the DAF-2/insulin receptor signaling pathway and by the presence of bacterial pathogens such as Salmonella typhimurium and Pseudomonas aeruginosa; an spp-1::gfp reporter fusion is expressed in the intestine. | Paper_evidence | WBPaper00003435 | |||
WBPaper00005976 | |||||||
WBPaper00029438 | |||||||
WBPaper00031463 | |||||||
WBPaper00032276 | |||||||
WBPaper00035289 | |||||||
WBPaper00041035 | |||||||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 05 Jul 2012 00:00:00 | ||||||
Automated_description | Enables pore-forming activity. Involved in defense response to other organism and pore formation in membrane of another organism. Part of pore complex. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | T07C4.4 | |||||
Corresponding_CDS_history | T07C4.4:wp108 | ||||||
Corresponding_transcript | T07C4.4.1 | ||||||
Other_sequence | CR10745 | ||||||
CBC10698_1 | |||||||
CRC07559_1 | |||||||
Associated_feature | WBsf227443 | ||||||
Experimental_info (8) | |||||||
Map_info | Map | III | Position | 2.4671 | Error | 0.002388 | |
Positive | Positive_clone | T07C4 | Inferred_automatically | From CDS info | |||
From sequence, transcript, pseudogene data | |||||||
Pseudo_map_position | |||||||
Reference (34) | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |