WormBase Tree Display for Gene: WBGene00004944
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| WBGene00004944 | Evidence | Paper_evidence | WBPaper00006349 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Person_evidence | WBPerson2543 | ||||||||
| SMap | S_parent | Sequence | C15A11 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | sol-1 | Person_evidence | WBPerson404 | |||||
| Sequence_name | C15A11.3 | ||||||||
| Molecular_name | C15A11.3 | ||||||||
| C15A11.3.1 | |||||||||
| CE36685 | |||||||||
| Other_name | CELE_C15A11.3 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | sol-1 | ||||||||
| DB_info | Database | AceView | gene | 1H966 | |||||
| WormQTL | gene | WBGene00004944 | |||||||
| WormFlux | gene | WBGene00004944 | |||||||
| NDB | locus_tag | CELE_C15A11.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004944|UniProtKB=Q93212 | |||||||
| family | PTHR47537 | ||||||||
| NCBI | gene | 172493 | |||||||
| RefSeq | protein | NM_059687.8 | |||||||
| SwissProt | UniProtAcc | Q93212 | |||||||
| TREEFAM | TREEFAM_ID | TF318542 | |||||||
| UniProt_GCRP | UniProtAcc | Q93212 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:37 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | sol | ||||||||
| Allele (77) | |||||||||
| Strain | WBStrain00040173 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (21) | |||||||||
| Ortholog (33) | |||||||||
| Paralog (48) | |||||||||
| Structured_description | Concise_description | sol-1 encodes a CUB domain-containing type I transmembrane protein; SOL-1 functions as an auxiliary protein for the AMPA-subtype ionotropic glutamate receptor GLR-1; specifically, SOL-1 regulates GLR-1's rate of desensitization as well as rate of recovery from desensitization; a secreted form of SOL-1 is sufficient to rescue behavioral and synaptic signaling defects of sol-1 mutant animals. | Paper_evidence | WBPaper00006349 | |||||
| WBPaper00027728 | |||||||||
| WBPaper00027045 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 13 Oct 2012 00:00:00 | ||||||||
| Automated_description | Enables channel regulator activity. Involved in several processes, including hyperosmotic response; positive regulation of glutamatergic synaptic transmission; and thigmotaxis. Located in neuron projection membrane and synapse. Part of ionotropic glutamate receptor complex. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C15A11.3 | |||||||
| Corresponding_CDS_history | C15A11.3:wp77 | ||||||||
| C15A11.3:wp125 | |||||||||
| Corresponding_transcript | C15A11.3.1 | ||||||||
| Other_sequence (11) | |||||||||
| Associated_feature | WBsf649316 | ||||||||
| WBsf664444 | |||||||||
| WBsf664445 | |||||||||
| WBsf664446 | |||||||||
| WBsf984172 | |||||||||
| WBsf1010080 | |||||||||
| WBsf219767 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00023049 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00002950 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00040574 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr2836 | ||||||||
| Expr1015838 | |||||||||
| Expr1144628 | |||||||||
| Expr2016002 | |||||||||
| Expr2034237 | |||||||||
| Drives_construct | WBCnstr00010978 | ||||||||
| WBCnstr00035312 | |||||||||
| Construct_product | WBCnstr00007991 | ||||||||
| WBCnstr00010978 | |||||||||
| WBCnstr00018390 | |||||||||
| WBCnstr00018419 | |||||||||
| WBCnstr00018420 | |||||||||
| WBCnstr00018421 | |||||||||
| WBCnstr00018683 | |||||||||
| WBCnstr00035312 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (173) | |||||||||
| Interaction (13) | |||||||||
| Map_info | Positive | Positive_clone | C15A11 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Mapping_data | Pos_neg_data | 10746 | |||||||
| 10745 | |||||||||
| Interpolated_map_position | I | 2.06382 | |||||||
| Reference (20) | |||||||||
| Method | Gene |
