WormBase Tree Display for Gene: WBGene00004917
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| WBGene00004917 | Evidence | Paper_evidence | WBPaper00005457 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C52E4 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | snr-4 | Person_evidence | WBPerson167 | |||||
| Sequence_name | C52E4.3 | ||||||||
| Molecular_name | C52E4.3 | ||||||||
| C52E4.3.1 | |||||||||
| CE08945 | |||||||||
| Other_name | CELE_C52E4.3 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | snr-4 | ||||||||
| DB_info | Database | AceView | gene | 5M460 | |||||
| WormQTL | gene | WBGene00004917 | |||||||
| WormFlux | gene | WBGene00004917 | |||||||
| NDB | locus_tag | CELE_C52E4.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004917|UniProtKB=Q18786 | |||||||
| family | PTHR12777 | ||||||||
| NCBI | gene | 179639 | |||||||
| RefSeq | protein | NM_073603.9 | |||||||
| SwissProt | UniProtAcc | Q18786 | |||||||
| TREEFAM | TREEFAM_ID | TF319595 | |||||||
| UniProt_GCRP | UniProtAcc | Q18786 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | snr | ||||||||
| Allele (21) | |||||||||
| Strain | WBStrain00052131 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (22) | |||||||||
| Contained_in_operon | CEOP5308 | ||||||||
| Ortholog (35) | |||||||||
| Structured_description | Automated_description | Predicted to be involved in spliceosomal snRNP assembly. Predicted to be located in cytosol and nucleus. Predicted to be part of pICln-Sm protein complex; spliceosomal complex; and spliceosomal snRNP complex. Expressed in gonad. Human ortholog(s) of this gene implicated in systemic lupus erythematosus. Is an ortholog of human SNRPD2 (small nuclear ribonucleoprotein D2 polypeptide). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:9074 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11159) | ||||
| Molecular_info | Corresponding_CDS | C52E4.3 | |||||||
| Corresponding_transcript | C52E4.3.1 | ||||||||
| Other_sequence (107) | |||||||||
| Associated_feature | WBsf653171 | ||||||||
| WBsf982008 | |||||||||
| WBsf1001496 | |||||||||
| WBsf1020523 | |||||||||
| WBsf234600 | |||||||||
| Experimental_info | RNAi_result (22) | ||||||||
| Expr_pattern | Expr2229 | ||||||||
| Expr1025826 | |||||||||
| Expr1032446 | |||||||||
| Expr1147009 | |||||||||
| Expr2015968 | |||||||||
| Expr2034203 | |||||||||
| Drives_construct | WBCnstr00035323 | ||||||||
| Construct_product | WBCnstr00035323 | ||||||||
| Antibody | WBAntibody00000550 | ||||||||
| WBAntibody00000552 | |||||||||
| WBAntibody00000553 | |||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (133) | |||||||||
| Interaction (232) | |||||||||
| Map_info | Map | V | Position | 3.55594 | Error | 0.002038 | |||
| Positive | Positive_clone | C52E4 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005457 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00040897 | |||||||||
| WBPaper00046572 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Locus was previously incorrectly associated with T28D9.10 [krb 030219] | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
