WormBase Tree Display for Gene: WBGene00004890
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| WBGene00004890 | SMap | S_parent | Sequence | D1037 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | smp-2 | Person_evidence | WBPerson893 | |||||
| Sequence_name | D1037.2 | ||||||||
| Molecular_name | D1037.2 | ||||||||
| D1037.2.1 | |||||||||
| CE46992 | |||||||||
| Other_name | CELE_D1037.2 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | smp-2 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | smp | ||||||||
| Allele (75) | |||||||||
| Strain | WBStrain00029153 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Ortholog (35) | |||||||||
| Paralog | WBGene00003111 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00004889 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00009094 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable chemorepellent activity and semaphorin receptor binding activity. Involved in nematode male tail mating organ morphogenesis. Predicted to be located in membrane. Expressed in several structures, including hook; inner labial neurons; pharyngeal cell; ray; and vulval cell. Human ortholog(s) of this gene implicated in progressive myoclonus epilepsy. Is an ortholog of several human genes including SEMA6A (semaphorin 6A); SEMA6B (semaphorin 6B); and SEMA6C (semaphorin 6C). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:891 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:10739) | ||||
| Molecular_info | Corresponding_CDS | D1037.2 | |||||||
| Corresponding_CDS_history | D1037.2:wp130 | ||||||||
| D1037.2:wp229 | |||||||||
| Corresponding_transcript | D1037.2.1 | ||||||||
| Other_sequence | CJC10063_1 | ||||||||
| CBC04147_1 | |||||||||
| Oden_isotig11913 | |||||||||
| Oden_isotig11912 | |||||||||
| FK806970.1 | |||||||||
| Associated_feature (13) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00022982 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00065917 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00091929 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00043363 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1886 | ||||||||
| Expr3277 | |||||||||
| Expr9189 | |||||||||
| Expr1027527 | |||||||||
| Expr1032429 | |||||||||
| Expr1147348 | |||||||||
| Expr2015923 | |||||||||
| Expr2034156 | |||||||||
| Drives_construct | WBCnstr00010502 | ||||||||
| WBCnstr00011279 | |||||||||
| WBCnstr00013780 | |||||||||
| WBCnstr00035339 | |||||||||
| Construct_product | WBCnstr00011279 | ||||||||
| WBCnstr00035339 | |||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (109) | |||||||||
| Interaction (19) | |||||||||
| Map_info | Map | I | Position | -2.99668 | Error | 0.016555 | |||
| Positive | Positive_clone | D1037 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4179 | |||||||
| 4327 | |||||||||
| 4670 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (23) | |||||||||
| Remark | Sequence connection from [Ginzburg VE, Roy PJ, Culotti JG]. Gene is cleaved off post-translationally. 02/06/11 krb. | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
