WormBase Tree Display for Gene: WBGene00004796
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| WBGene00004796 | SMap | S_parent | Sequence | ZK520 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | sid-2 | Paper_evidence | WBPaper00030758 | |||||
| Person_evidence | WBPerson278 | ||||||||
| Sequence_name | ZK520.2 | ||||||||
| Molecular_name | ZK520.2 | ||||||||
| ZK520.2.1 | |||||||||
| CE33908 | |||||||||
| Other_name | CELE_ZK520.2 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | sid-2 | ||||||||
| DB_info | Database | AceView | gene | 3O771 | |||||
| WormQTL | gene | WBGene00004796 | |||||||
| WormFlux | gene | WBGene00004796 | |||||||
| NDB | locus_tag | CELE_ZK520.2 | |||||||
| NCBI | gene | 176805 | |||||||
| RefSeq | protein | NM_067422.7 | |||||||
| SwissProt | UniProtAcc | G5EEV9 | |||||||
| TREEFAM | TREEFAM_ID | TF336209 | |||||||
| UniProt_GCRP | UniProtAcc | G5EEV9 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 21 Jun 2007 14:27:32 | WBPerson2970 | Event | Acquires_merge | WBGene00013991 | ||||
| Name_change | Sequence_name | ZK520.2 | |||||||
| Acquires_merge | WBGene00013991 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | sid | ||||||||
| Allele (57) | |||||||||
| Possibly_affected_by | WBVar02157710 | ||||||||
| Strain | WBStrain00008331 | ||||||||
| WBStrain00008332 | |||||||||
| WBStrain00036339 | |||||||||
| WBStrain00008334 | |||||||||
| WBStrain00055402 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Ortholog (17) | |||||||||
| Structured_description | Concise_description | sid-2 encodes a novel, single-pass transmembrane protein; SID-2 is required for environmental-mediated (i.e. ingestion or soaking) RNA interference (RNAi); SID-2::GFP is expressed strongly in the intestine where it localizes to the apical (lumenal) membrane; SID-2::GFP is also expressed at much lower levels in the excretory duct cells; when expressed in Caenorhabditis briggsae, a related nematode species deficient for environmental RNAi, SID-2 is able to confer environmental RNAi. | Paper_evidence | WBPaper00030758 | |||||
| Curator_confirmed | WBPerson48 | ||||||||
| WBPerson1843 | |||||||||
| Date_last_updated | 07 Aug 2007 00:00:00 | ||||||||
| Automated_description | Involved in RNA transport and regulatory ncRNA-mediated post-transcriptional gene silencing. Located in apical plasma membrane and cytoplasm. Expressed in ciliated neurons; excretory duct; intestine; and in male. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | ZK520.2 | |||||||
| Corresponding_CDS_history | ZK520.2:wp59 | ||||||||
| ZK520.2:wp99 | |||||||||
| Corresponding_transcript | ZK520.2.1 | ||||||||
| Other_sequence | CBC06017_1 | ||||||||
| CJC08059_1 | |||||||||
| Associated_feature | WBsf226046 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00095011 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00022043 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00059485 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00065334 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00006459 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00038323 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr8162 | ||||||||
| Expr15979 | |||||||||
| Expr15980 | |||||||||
| Expr1022525 | |||||||||
| Expr1032380 | |||||||||
| Expr1162902 | |||||||||
| Expr2015815 | |||||||||
| Expr2034048 | |||||||||
| Drives_construct | WBCnstr00001913 | ||||||||
| WBCnstr00007324 | |||||||||
| WBCnstr00013150 | |||||||||
| WBCnstr00035383 | |||||||||
| Construct_product | WBCnstr00007324 | ||||||||
| WBCnstr00013150 | |||||||||
| WBCnstr00016039 | |||||||||
| WBCnstr00035383 | |||||||||
| Regulate_expr_cluster | WBPaper00060479:sid-2(mj465)_downregulated | ||||||||
| WBPaper00060479:sid-2(mj465)_upregulated | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (158) | |||||||||
| Interaction | WBInteraction000580389 | ||||||||
| Map_info | Map | III | Position | 21.3572 | Error | 0.000452 | |||
| Positive | Positive_clone | ZK520 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (32) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
