WormBase Tree Display for Gene: WBGene00004787
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| WBGene00004787 | SMap | S_parent | Sequence | H06I04 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | sft-1 | Person_evidence | WBPerson699 | |||||
| Sequence_name | H06I04.2 | ||||||||
| Molecular_name | H06I04.2a | ||||||||
| H06I04.2a.1 | |||||||||
| CE23794 | |||||||||
| H06I04.2b | |||||||||
| CE50193 | |||||||||
| H06I04.2b.1 | |||||||||
| Other_name | Surf-1 | Paper_evidence | WBPaper00013574 | ||||||
| CELE_H06I04.2 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | sft-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:36 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | sft | ||||||||
| Allele (100) | |||||||||
| Strain | WBStrain00036882 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00001319 | ||||||||
| 00001320 | |||||||||
| 00001321 | |||||||||
| 00001322 | |||||||||
| 00095566 | |||||||||
| 00095567 | |||||||||
| 00113186 | |||||||||
| Contained_in_operon | CEOP3088 | ||||||||
| CEOP3092 | |||||||||
| Ortholog (35) | |||||||||
| Paralog | WBGene00004788 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00011379 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to be involved in mitochondrial cytochrome c oxidase assembly. Predicted to be located in mitochondrion. Expressed in body wall musculature. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 4K and Leigh disease. Is an ortholog of human SURF1 (SURF1 cytochrome c oxidase assembly factor). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0070491 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11474) | ||||
| DOID:3652 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11474) | ||||||
| DOID:0110187 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11474) | ||||||
| Molecular_info | Corresponding_CDS | H06I04.2a | |||||||
| H06I04.2b | |||||||||
| Corresponding_transcript | H06I04.2a.1 | ||||||||
| H06I04.2b.1 | |||||||||
| Other_sequence (40) | |||||||||
| Associated_feature | WBsf645008 | ||||||||
| WBsf658733 | |||||||||
| WBsf991666 | |||||||||
| WBsf991667 | |||||||||
| WBsf1014508 | |||||||||
| WBsf224575 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00049318 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00007081 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00033674 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00049319 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr11502 | ||||||||
| Expr1019982 | |||||||||
| Expr1032374 | |||||||||
| Expr1153063 | |||||||||
| Expr2015788 | |||||||||
| Expr2034021 | |||||||||
| Construct_product | WBCnstr00018941 | ||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (84) | |||||||||
| Interaction (28) | |||||||||
| Map_info | Map | III | Position | -7.80467 | Error | 0.050601 | |||
| Positive | Positive_clone | H06I04 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00013574 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00044767 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Sequence connection from [Brown GK, Delaney C, Woollard AC], 02/06/11 krb. | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
