WormBase Tree Display for Gene: WBGene00004473

WBGene00004473 SMap: S_parent: Sequence: Y43B11AR
  Identity: Version: 1
    Name: CGC_name: rps-4
      Sequence_name: Y43B11AR.4
      Molecular_name: Y43B11AR.4
        Y43B11AR.4.1
        CE24278
      Other_name: CELE_Y43B11AR.4 Accession_evidence: NDB BX284604
      Public_name: rps-4
    DB_info: Database: AceView gene 4H848
        WormQTL gene WBGene00004473
        WormFlux gene WBGene00004473
        NDB locus_tag CELE_Y43B11AR.4
        Panther gene CAEEL|WormBase=WBGene00004473|UniProtKB=Q9N3X2
          family PTHR11581
        NCBI gene 177481
        RefSeq protein NM_068702.8
        SwissProt UniProtAcc Q9N3X2
        TREEFAM TREEFAM_ID TF300612
        UniProt_GCRP UniProtAcc Q9N3X2
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:35 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rps
    Allele (20)
    Legacy_information: Orthologous to yeast (S.cerevisiae) ribosomal protein rps4 using blastP
    Strain: WBStrain00001565
    RNASeq_FPKM (74)
    GO_annotation (12)
    Ortholog (42)
    Structured_description: Concise_description: rps-4 encodes a small ribosomal subunit S4 protein. Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Is an ortholog of human RPS4X (ribosomal protein S4 X-linked); RPS4Y1 (ribosomal protein S4 Y-linked 1); and RPS4Y2 (ribosomal protein S4 Y-linked 2). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y43B11AR.4
    Corresponding_transcript: Y43B11AR.4.1
    Other_sequence (293)
    Associated_feature: WBsf651883
      WBsf667637
      WBsf667990
      WBsf667991
      WBsf981778
      WBsf230218
      WBsf238434
      WBsf238435
  Experimental_info: RNAi_result: WBRNAi00106901 Inferred_automatically: RNAi_primary
      WBRNAi00056459 Inferred_automatically: RNAi_primary
    Expr_pattern: Chronogram907
      Expr6968
      Expr1022160
      Expr1032276
      Expr1159931
      Expr2015528
      Expr2033763
    Drives_construct: WBCnstr00002405
      WBCnstr00035457
    Construct_product: WBCnstr00035457
    Microarray_results (16)
    Expression_cluster (153)
    Interaction (308)
  Map_info: Map: IV Position: 3.28842 Error: 0.000417
    Positive: Positive_clone: Y43B11AR Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00005697
    WBPaper00031006
    WBPaper00033208
    WBPaper00038491
    WBPaper00049828
    WBPaper00055090
    WBPaper00065988
  Remark: rps-4 is described as "Orthologous to yeast (S.cerevisiae) ribosomal protein rps4 using blastP". BlastP of C. elegans with sp|P05753|RS4_YEAST gives the hit Y43B11AR.4 Person_evidence: WBPerson567
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene