WormBase Tree Display for Gene: WBGene00004413
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| WBGene00004413 | SMap | S_parent | Sequence | B0250 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | rpl-2 | |||||||
| Sequence_name | B0250.1 | ||||||||
| Molecular_name | B0250.1 | ||||||||
| B0250.1.1 | |||||||||
| CE18478 | |||||||||
| Other_name | CELE_B0250.1 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | rpl-2 | ||||||||
| DB_info | Database | AceView | gene | 5U949 | |||||
| WormQTL | gene | WBGene00004413 | |||||||
| WormFlux | gene | WBGene00004413 | |||||||
| NDB | locus_tag | CELE_B0250.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00004413|UniProtKB=Q9XVF7 | |||||||
| family | PTHR13691 | ||||||||
| NCBI | gene | 180343 | |||||||
| RefSeq | protein | NM_075539.9 | |||||||
| SwissProt | UniProtAcc | Q9XVF7 | |||||||
| TREEFAM | TREEFAM_ID | TF300748 | |||||||
| UniProt_GCRP | UniProtAcc | Q9XVF7 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:35 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rpl | ||||||||
| Allele (29) | |||||||||
| Legacy_information | Orthologous to yeast (S.cerevisiae) ribosomal protein rpl2 using blastP | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (14) | |||||||||
| Ortholog (47) | |||||||||
| Paralog | WBGene00007120 | Caenorhabditis elegans | From_analysis | modENCODE_Pseudogenes | |||||
| WBGene00007124 | Caenorhabditis elegans | From_analysis | modENCODE_Pseudogenes | ||||||
| WBGene00018932 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | rpl-2 encodes a large ribosomal subunit L8 protein. | Curator_confirmed | WBPerson567 | |||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Predicted to be located in cytoplasm and ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is an ortholog of human RPL8 (ribosomal protein L8). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | B0250.1 | |||||||
| Corresponding_transcript | B0250.1.1 | ||||||||
| Other_sequence (286) | |||||||||
| Associated_feature | WBsf647744 | ||||||||
| WBsf662245 | |||||||||
| WBsf662246 | |||||||||
| WBsf982093 | |||||||||
| Experimental_info | RNAi_result (19) | ||||||||
| Expr_pattern | Expr1017637 | ||||||||
| Expr1143005 | |||||||||
| Expr2015461 | |||||||||
| Expr2033696 | |||||||||
| Drives_construct | WBCnstr00035505 | ||||||||
| Construct_product | WBCnstr00035505 | ||||||||
| Microarray_results | SMD_B0250.1 | ||||||||
| 174080_s_at | |||||||||
| 190162_at | |||||||||
| A_12_P145095 | |||||||||
| Aff_B0250.1 | |||||||||
| GPL14144_B0250.1_570-629_0.953_2_B | |||||||||
| GPL3518_CE18478 | |||||||||
| GPL8304_CE_WBGene00004413_A | |||||||||
| GPL8673_B0250_1P00083 | |||||||||
| GPL8673_B0250_1P00506 | |||||||||
| Expression_cluster (154) | |||||||||
| Interaction (250) | |||||||||
| Map_info | Map | V | Position | 24.9986 | Error | 0.000733 | |||
| Positive | Positive_clone | B0250 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005654 | ||||||||
| WBPaper00025088 | |||||||||
| WBPaper00032502 | |||||||||
| WBPaper00035149 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00041488 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00061547 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
