WormBase Tree Display for Gene: WBGene00004382
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| WBGene00004382 | SMap | S_parent | Sequence | F59A6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | rnh-1.0 | Paper_evidence | WBPaper00027023 | |||||
| Sequence_name | F59A6.6 | ||||||||
| Molecular_name (11) | |||||||||
| Other_name | rnh-1 | Paper_evidence | WBPaper00005577 | ||||||
| CELE_F59A6.6 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | rnh-1.0 | ||||||||
| DB_info | Database (13) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:35 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 24 Mar 2006 09:56:26 | WBPerson2970 | Name_change | CGC_name | rnh-1.0 | ||||
| Other_name | rnh-1 | ||||||||
| 3 | 06 Apr 2006 09:52:55 | WBPerson2970 | Event | Acquires_merge | WBGene00019088 | ||||
| Acquires_merge | WBGene00019088 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rnh | ||||||||
| Allele (41) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (16) | |||||||||
| Contained_in_operon | CEOP2727 | ||||||||
| CEOP2152 | |||||||||
| Ortholog (36) | |||||||||
| Paralog | WBGene00010787 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WBGene00011664 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00007303 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00022888 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | rnh-1.0 is one of four C. elegans genes that can encode an RNase H ribonuclease; when expressed in vitro, RNH-1.0 isoforms exhibit RNase H activity; rnh-1.0 transcripts are expressed throughout development. | Paper_evidence | WBPaper00005577 | |||||
| WBPaper00004424 | |||||||||
| WBPaper00027023 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson1983 | |||||||||
| Date_last_updated | 25 Feb 2014 00:00:00 | ||||||||
| Automated_description | Enables RNA-DNA hybrid ribonuclease activity. Predicted to be involved in DNA replication, removal of RNA primer. Human ortholog(s) of this gene implicated in autosomal recessive progressive external ophthalmoplegia with mitochondrial DNA deletions 2. Is an ortholog of human RNASEH1 (ribonuclease H1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0111515 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:18466) | ||||
| Molecular_info | Corresponding_CDS | F59A6.6a | |||||||
| F59A6.6b | |||||||||
| F59A6.6c | |||||||||
| Corresponding_CDS_history | F59A6.6a:wp97 | ||||||||
| F59A6.6d:wp242 | |||||||||
| F59A6.6d:wp260 | |||||||||
| Corresponding_transcript | F59A6.6a.1 | ||||||||
| F59A6.6a.2 | |||||||||
| F59A6.6a.3 | |||||||||
| F59A6.6b.1 | |||||||||
| F59A6.6c.1 | |||||||||
| Other_sequence (65) | |||||||||
| Associated_feature | WBsf657563 | ||||||||
| WBsf221212 | |||||||||
| WBsf221213 | |||||||||
| WBsf221214 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00025766 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00016054 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00049116 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00078467 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00016055 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00000333 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00027380 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr3820 | ||||||||
| Expr3821 | |||||||||
| Expr3822 | |||||||||
| Expr3823 | |||||||||
| Expr3824 | |||||||||
| Expr1028224 | |||||||||
| Expr1032193 | |||||||||
| Expr1152860 | |||||||||
| Expr2015385 | |||||||||
| Expr2033619 | |||||||||
| Drives_construct | WBCnstr00035523 | ||||||||
| Construct_product | WBCnstr00035523 | ||||||||
| Microarray_results (48) | |||||||||
| Expression_cluster (104) | |||||||||
| Interaction | WBInteraction000123851 | ||||||||
| WBInteraction000134092 | |||||||||
| WBInteraction000138973 | |||||||||
| WBInteraction000576717 | |||||||||
| Map_info | Map | II | Position | -2.60048 | Error | 0.00164 | |||
| Positive | Positive_clone | F59A6 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005577 | ||||||||
| WBPaper00027023 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064312 | |||||||||
| WBPaper00065080 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
