WormBase Tree Display for Gene: WBGene00004160
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WBGene00004160 | SMap | S_parent | Sequence | Y105C5A | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | CGC_name | pqn-79 | Person_evidence | WBPerson625 | |||||
Sequence_name | Y105C5A.6 | ||||||||
Molecular_name | Y105C5A.6 | ||||||||
Y105C5A.6.1 | |||||||||
CE23185 | |||||||||
Other_name | CELE_Y105C5A.6 | Accession_evidence | NDB | BX284604 | |||||
Public_name | pqn-79 | ||||||||
DB_info | Database | AceView | gene | 4Q357 | |||||
WormFlux | gene | WBGene00004160 | |||||||
NDB | locus_tag | CELE_Y105C5A.6 | |||||||
NCBI | gene | 190872 | |||||||
RefSeq | protein | NM_070474.1 | |||||||
TREEFAM | TREEFAM_ID | TF315535 | |||||||
TrEMBL | UniProtAcc | G5ECQ7 | |||||||
UniProt_GCRP | UniProtAcc | G5ECQ7 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 07 Apr 2004 11:29:34 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | pqn | ||||||||
Allele (13) | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog (26) | |||||||||
Paralog (20) | |||||||||
Structured_description | Concise_description | The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). | Paper_evidence (6) | ||||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
Automated_description | Is affected by several genes including daf-2; pmk-1; and clk-1 based on tiling array; microarray; and RNA-seq studies. Is affected by ten chemicals including aldicarb; Neurotoxins; and Cry5B based on microarray studies. Is predicted to encode a protein with the following domains: Protein of unknown function (DUF1096) and Protein of unknown function DUF1096. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | Y105C5A.6 | |||||||
Corresponding_transcript | Y105C5A.6.1 | ||||||||
Other_sequence | JI179059.1 | ||||||||
JI174243.1 | |||||||||
Experimental_info | RNAi_result | WBRNAi00093067 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00093068 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00093062 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00093073 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00093069 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00093063 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00021413 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00019834 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00019833 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00055183 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1158720 | ||||||||
Drives_construct | WBCnstr00035660 | ||||||||
Construct_product | WBCnstr00035660 | ||||||||
Microarray_results | SMD_Y105C5A.E | ||||||||
172552_x_at | |||||||||
172573_x_at | |||||||||
172585_x_at | |||||||||
172605_x_at | |||||||||
GPL3518_CE23185 | |||||||||
GPL8304_CE_WBGene00004160_B | |||||||||
GPL8673_Y105C5A_6P00870 | |||||||||
Expression_cluster (40) | |||||||||
Interaction | WBInteraction000005818 | ||||||||
WBInteraction000502260 | |||||||||
WBInteraction000503316 | |||||||||
Map_info | Map | IV | Position | 14.2323 | |||||
Positive | Positive_clone | Y105C5A | Inferred_automatically | From CDS info | |||||
From sequence, transcript, pseudogene data | |||||||||
Pseudo_map_position | |||||||||
Reference | WBPaper00055090 | ||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |