WormBase Tree Display for Gene: WBGene00004160
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WBGene00004160 | SMap | S_parent | Sequence | Y105C5A | ||
---|---|---|---|---|---|---|
Identity (6) | ||||||
Gene_info | Biotype | SO:0001217 | ||||
Gene_class | pqn | |||||
Allele (13) | ||||||
RNASeq_FPKM (74) | ||||||
Ortholog (26) | ||||||
Paralog (20) | ||||||
Structured_description | Concise_description | The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). | Paper_evidence | WBPaper00005068 | ||
WBPaper00012788 | ||||||
WBPaper00012830 | ||||||
WBPaper00012882 | ||||||
WBPaper00012897 | ||||||
WBPaper00013003 | ||||||
Curator_confirmed | WBPerson567 | |||||
Date_last_updated | 17 Jun 2004 00:00:00 | |||||
Automated_description | Is affected by several genes including daf-2; pmk-1; and clk-1 based on tiling array; microarray; and RNA-seq studies. Is affected by ten chemicals including aldicarb; Neurotoxins; and Cry5B based on microarray studies. Is predicted to encode a protein with the following domains: Protein of unknown function (DUF1096) and Protein of unknown function DUF1096. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | |||||
WBPerson37462 | ||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||
Molecular_info | Corresponding_CDS | Y105C5A.6 | ||||
Corresponding_transcript | Y105C5A.6.1 | |||||
Other_sequence | JI179059.1 | |||||
JI174243.1 | ||||||
Experimental_info | RNAi_result | WBRNAi00093067 | Inferred_automatically | RNAi_primary | ||
WBRNAi00093068 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00093062 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00093073 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00093069 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00093063 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00021413 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00019834 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00019833 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00055183 | Inferred_automatically | RNAi_primary | ||||
Expr_pattern | Expr1158720 | |||||
Drives_construct | WBCnstr00035660 | |||||
Construct_product | WBCnstr00035660 | |||||
Microarray_results | SMD_Y105C5A.E | |||||
172552_x_at | ||||||
172573_x_at | ||||||
172585_x_at | ||||||
172605_x_at | ||||||
GPL3518_CE23185 | ||||||
GPL8304_CE_WBGene00004160_B | ||||||
GPL8673_Y105C5A_6P00870 | ||||||
Expression_cluster (40) | ||||||
Interaction | WBInteraction000005818 | |||||
WBInteraction000502260 | ||||||
WBInteraction000503316 | ||||||
Map_info | Map | IV | Position | 14.2323 | ||
Positive | Positive_clone | Y105C5A | Inferred_automatically | From CDS info | ||
From sequence, transcript, pseudogene data | ||||||
Pseudo_map_position | ||||||
Reference | WBPaper00055090 | |||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||
Method | Gene |