WormBase Tree Display for Gene: WBGene00004127
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WBGene00004127 | SMap | S_parent | Sequence | F52D1 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | abu-12 | Paper_evidence | WBPaper00038304 | |||
Person_evidence | WBPerson3 | ||||||
Sequence_name | F52D1.3 | ||||||
Molecular_name | F52D1.3a | ||||||
F52D1.3a.1 | |||||||
CE37115 | |||||||
F52D1.3b | |||||||
CE51468 | |||||||
F52D1.3c | |||||||
CE51512 | |||||||
F52D1.3b.1 | |||||||
F52D1.3c.1 | |||||||
Other_name | pqn-40 | Person_evidence | WBPerson265 | ||||
CELE_F52D1.3 | Accession_evidence | NDB | BX284606 | ||||
Public_name | abu-12 | ||||||
DB_info | Database | AceView | gene | XB70 | |||
WormQTL | gene | WBGene00004127 | |||||
WormFlux | gene | WBGene00004127 | |||||
NDB | locus_tag | CELE_F52D1.3 | |||||
NCBI | gene | 180399 | |||||
RefSeq | protein | NM_001380891.1 | |||||
NM_001380890.1 | |||||||
NM_075703.5 | |||||||
TrEMBL | UniProtAcc | A0A131MD32 | |||||
A0A131MC08 | |||||||
O17351 | |||||||
UniProt_GCRP | UniProtAcc | A0A131MC08 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | abu | ||||||
Allele (109) | |||||||
RNASeq_FPKM (74) | |||||||
Ortholog (24) | |||||||
Structured_description | Concise_description | The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). | Paper_evidence | WBPaper00005068 | |||
WBPaper00012788 | |||||||
WBPaper00012830 | |||||||
WBPaper00012882 | |||||||
WBPaper00012897 | |||||||
WBPaper00013003 | |||||||
Curator_confirmed | WBPerson567 | ||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
Automated_description | Enriched in epithelial cell; head mesodermal cell; hypodermis; and mechanosensory neurons based on microarray; tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including nuo-6; mut-16; and atfs-1 based on microarray; tiling array; RNA-seq; and proteomic studies. Is affected by twenty-two chemicals including hydrogen sulfide; methylmercury hydroxide; and 1-methylnicotinamide based on microarray and RNA-seq studies. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS292 version of WormBase | ||||||
Date_last_updated | 24 Apr 2024 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | F52D1.3a | |||||
F52D1.3b | |||||||
F52D1.3c | |||||||
Corresponding_CDS_history | F52D1.3:wp128 | ||||||
Corresponding_transcript | F52D1.3a.1 | ||||||
F52D1.3b.1 | |||||||
F52D1.3c.1 | |||||||
Other_sequence | BF199494.1 | ||||||
OVC01468_1 | |||||||
JI180037.1 | |||||||
JI167408.1 | |||||||
SR02925 | |||||||
AA618919.1 | |||||||
Associated_feature (13) | |||||||
Experimental_info | RNAi_result | WBRNAi00093376 | Inferred_automatically | RNAi_primary | |||
WBRNAi00093385 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00047960 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00015393 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00093381 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00001824 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1024698 | ||||||
Expr1032002 | |||||||
Expr1151779 | |||||||
Expr2009105 | |||||||
Expr2027341 | |||||||
Drives_construct | WBCnstr00037937 | ||||||
Construct_product | WBCnstr00037937 | ||||||
Microarray_results (18) | |||||||
Expression_cluster (232) | |||||||
Interaction (153) | |||||||
WBProcess | WBbiopr:00000079 | ||||||
Map_info | Map | X | Position | -19.8487 | |||
Positive | Positive_clone | F52D1 | Inferred_automatically | From CDS info | |||
From sequence, transcript, pseudogene data | |||||||
Pseudo_map_position | |||||||
Reference (2) | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |