WormBase Tree Display for Gene: WBGene00004119
expand all nodes | collapse all nodes | view schema
WBGene00004119 | SMap | S_parent | Sequence | F21C10 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | pqn | ||||||
Allele (22) | |||||||
RNASeq_FPKM (74) | |||||||
Ortholog (21) | |||||||
Paralog | WBGene00004123 | Caenorhabditis elegans | From_analysis | TreeFam | |||
Structured_description | Concise_description | The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). | Paper_evidence | WBPaper00005068 | |||
WBPaper00012788 | |||||||
WBPaper00012830 | |||||||
WBPaper00012882 | |||||||
WBPaper00012897 | |||||||
WBPaper00013003 | |||||||
Curator_confirmed | WBPerson567 | ||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
Automated_description | Enriched in head mesodermal cell and pharynx based on RNA-seq studies. Is affected by several genes including daf-2; glp-1; and dpy-10 based on microarray; RNA-seq; and tiling array studies. Is affected by twenty-one chemicals including Ethanol; methylmercuric chloride; and rotenone based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed (2) | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | F21C10.8a | |||||
F21C10.8b | |||||||
Corresponding_transcript (2) | |||||||
Other_sequence (11) | |||||||
Associated_feature | WBsf1000818 | ||||||
WBsf1000819 | |||||||
WBsf1020133 | |||||||
WBsf232211 | |||||||
Experimental_info | RNAi_result | WBRNAi00045178 | Inferred_automatically | RNAi_primary | |||
WBRNAi00031206 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00013664 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1020920 | ||||||
Expr1149117 | |||||||
Expr2015046 | |||||||
Expr2033281 | |||||||
Drives_construct | WBCnstr00035682 | ||||||
Construct_product | WBCnstr00035682 | ||||||
Microarray_results (23) | |||||||
Expression_cluster (254) | |||||||
Interaction | WBInteraction000303692 | ||||||
WBInteraction000341945 | |||||||
WBInteraction000547861 | |||||||
WBInteraction000547862 | |||||||
WBInteraction000549444 | |||||||
WBInteraction000549454 | |||||||
Map_info | Map | V | Position | 1.9399 | Error | 0.002842 | |
Positive | Positive_clone | F21C10 | Inferred_automatically | From CDS info | |||
From sequence, transcript, pseudogene data | |||||||
Pseudo_map_position | |||||||
Reference | WBPaper00058665 | ||||||
WBPaper00064648 | |||||||
WBPaper00065331 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |