WormBase Tree Display for Gene: WBGene00003960
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WBGene00003960 | SMap | S_parent | Sequence | F54D5 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | pcs | ||||||
Allele (47) | |||||||
Strain | WBStrain00039997 | ||||||
WBStrain00040000 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (24) | |||||||
Ortholog (25) | |||||||
Structured_description | Concise_description | pcs-1 encodes a phytochelatin synthase; PCS-1 exhibits cadmium-activated synthesis of phytochelatins, peptides with the general structure (gamma-Glu-Cys)n-Xaa that sequester heavy metals, and is required in animals for the response to, and detoxification of cadmium; when expressed in yeast, PCS-1 also mediates the detoxification of mercury and arsenic. | Paper_evidence | WBPaper00004738 | |||
WBPaper00025092 | |||||||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 12 Mar 2010 00:00:00 | ||||||
Automated_description | Enables glutathione gamma-glutamylcysteinyltransferase activity. Involved in phytochelatin biosynthetic process and response to metal ion. Expressed in several structures, including coelomocyte; non-striated muscle; pharyngeal-intestinal valve; pharynx; and rectal valve cell. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | F54D5.1a | |||||
F54D5.1b | |||||||
Corresponding_CDS_history | F54D5.1:wp175 | ||||||
Corresponding_transcript | F54D5.1a.1 | ||||||
F54D5.1b.1 | |||||||
Other_sequence (29) | |||||||
Associated_feature | WBsf650596 | ||||||
WBsf666168 | |||||||
WBsf981287 | |||||||
WBsf223963 | |||||||
Experimental_info | RNAi_result (11) | ||||||
Expr_pattern | Chronogram598 | ||||||
Expr108 | |||||||
Expr3101 | |||||||
Expr9005 | |||||||
Expr1025837 | |||||||
Expr1031884 | |||||||
Expr1152108 | |||||||
Expr2014789 | |||||||
Expr2033023 | |||||||
Drives_construct | WBCnstr00002739 | ||||||
WBCnstr00007021 | |||||||
WBCnstr00011137 | |||||||
WBCnstr00035773 | |||||||
Construct_product | WBCnstr00035773 | ||||||
Microarray_results (20) | |||||||
Expression_cluster (112) | |||||||
Interaction | WBInteraction000313166 | ||||||
WBInteraction000524519 | |||||||
WBInteraction000566350 | |||||||
WBInteraction000566629 | |||||||
WBInteraction000576338 | |||||||
WBProcess | WBbiopr:00000065 | ||||||
WBbiopr:00000096 | |||||||
Map_info | Map | II | Position | 3.768 | Error | 0.004725 | |
Positive | Positive_clone | F54D5 | Inferred_automatically | From CDS info | |||
From sequence, transcript, pseudogene data | |||||||
Mapping_data | Multi_point (2) | ||||||
Pseudo_map_position | |||||||
Reference (17) | |||||||
Remark | Sequence connection from [Vatamaniuk OK, Bucher EA]. krb 13/11/01 | ||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||
Method | Gene |