WormBase Tree Display for Gene: WBGene00003927
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WBGene00003927 | Evidence | CGC_data_submission | |||||
---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | CD4 | ||||
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | pas | ||||||
Allele (24) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (16) | |||||||
Ortholog (39) | |||||||
Paralog (13) | |||||||
Structured_description | Concise_description | pas-6 encodes a type 1 alpha subunit of the 26S proteasome's 20S protease core particle (CP); PAS-6 is required for embryonic, larval, and germline development and by homology, is predicted to comprise the outer rings of the proteasome and to play a role in selective degradation of ubiquitinated proteins during development; in vitro, PAS-6 interacts with BRP-1, a glutamine/asparagine (Q/N)-rich domain-containing protein conserved amongst nematodes, and with other members of the proteasome. | Paper_evidence | WBPaper00004888 | |||
WBPaper00005553 | |||||||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 17 Jun 2004 00:00:00 | ||||||
Automated_description | Predicted to be involved in proteasomal protein catabolic process. Predicted to be located in nucleus. Predicted to be part of proteasome core complex, alpha-subunit complex. Is an ortholog of human PSMA1 (proteasome 20S subunit alpha 1). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | CD4.6 | |||||
Corresponding_transcript | CD4.6.1 | ||||||
Other_sequence (84) | |||||||
Associated_feature | WBsf652636 | ||||||
WBsf1000032 | |||||||
WBsf1000033 | |||||||
WBsf1019659 | |||||||
WBsf233702 | |||||||
Experimental_info | RNAi_result (23) | ||||||
Expr_pattern | Expr1028074 | ||||||
Expr1031860 | |||||||
Expr1147286 | |||||||
Expr2014745 | |||||||
Expr2032979 | |||||||
Drives_construct | WBCnstr00035791 | ||||||
Construct_product | WBCnstr00035791 | ||||||
Microarray_results (19) | |||||||
Expression_cluster (138) | |||||||
Interaction (187) | |||||||
Map_info | Map | V | Position | -1.38993 | Error | 0.023845 | |
Positive | Positive_clone | CD4 | Inferred_automatically | From CDS info | |||
From sequence, transcript, pseudogene data | |||||||
Mapping_data | Multi_point | 5254 | |||||
4462 | |||||||
4505 | |||||||
Pseudo_map_position | |||||||
Reference (12) | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |