WormBase Tree Display for Gene: WBGene00003804
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| WBGene00003804 | Evidence | CGC_data_submission | |||||||
|---|---|---|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y43F4B | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | npp-18 | Person_evidence | WBPerson1780 | |||||
| Sequence_name | Y43F4B.4 | ||||||||
| Molecular_name | Y43F4B.4 | ||||||||
| Y43F4B.4.1 | |||||||||
| CE16629 | |||||||||
| Other_name | CeSeh1 | Person_evidence | WBPerson1780 | ||||||
| CELE_Y43F4B.4 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | npp-18 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:33 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | npp | ||||||||
| Allele (37) | |||||||||
| Strain | WBStrain00003285 | ||||||||
| WBStrain00037378 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Contained_in_operon | CEOP3776 | ||||||||
| Ortholog (35) | |||||||||
| Paralog | WBGene00003806 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable structural molecule activity. Predicted to be involved in cellular response to amino acid starvation and positive regulation of TORC1 signaling. Predicted to be located in lysosomal membrane and nuclear envelope. Predicted to be part of Seh1-associated complex and nuclear pore outer ring. Is an ortholog of human SEH1L (SEH1 like nucleoporin). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y43F4B.4 | |||||||
| Corresponding_transcript | Y43F4B.4.1 | ||||||||
| Other_sequence (24) | |||||||||
| Associated_feature | WBsf659708 | ||||||||
| WBsf659709 | |||||||||
| WBsf225981 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00037044 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00078423 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00091606 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00114658 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00056490 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00006393 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00008150 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00020543 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00001677 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr6971 | ||||||||
| Expr14729 | |||||||||
| Expr14738 | |||||||||
| Expr14739 | |||||||||
| Expr1014398 | |||||||||
| Expr1031790 | |||||||||
| Expr1159959 | |||||||||
| Expr2014377 | |||||||||
| Expr2032618 | |||||||||
| Drives_construct | WBCnstr00003756 | ||||||||
| WBCnstr00035858 | |||||||||
| WBCnstr00038978 | |||||||||
| Construct_product | WBCnstr00035858 | ||||||||
| WBCnstr00038978 | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (100) | |||||||||
| Interaction (72) | |||||||||
| Map_info | Map | III | Position | 21.2065 | Error | 0.001454 | |||
| Positive | Positive_clone | Y43F4B | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00006202 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
